| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3599 |
|---|
| Symbol | |
|---|
| ID | 5453736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3848991 |
|---|
| End bp | 3851717 |
|---|
| Gene Length | 2727 bp |
|---|
| Protein Length | 908 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640879183 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_001414854 |
|---|
| Protein GI | 154254030 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAGC CCGCCACCTC CTTCACTCCC GAAATCCCGT CTGCCCTGCC GTCCATCCCG
GCAGATGCCA CACCCATGAT GGCGCAATAT CTGGAGATCA AGGCGCGCTG GCCCGAAGCC
CTCCTCTTCT ACCGGATGGG CGATTTCTAC GAGCTCTTCT TCGAGGATGC CGTAGCGGCA
TCCGCCGCCC TCGACATCGC GCTGACAAAG CGCGGCAAGC ATCTGGGCGA GGACATCCCC
ATGTGCGGCG TCCCCGTCCA CAGCCATGAT GCCTATCTCC AGCGTCTCAT CCGCAAGGGC
TTCAAGGTCG CCGTCTGCGA GCAGGTCGAG GACCCGGCGG AGGCGAAGAA GCGCGGCGCC
AAATCCGTCG TCGCCCGCGC CGTCGCCCGC CTCGTCACGC CCGGCACCCT GACCGAGGAC
ACGCTGCTCG ATGCGCGTGC CCATAATTAT CTGGCCGCCT TGTCCCGCAC CGGCGCGGAG
GCGGGCTTCG GCCTCGCCTG GGTCGATGTC TCGACCGGCG ATTTCGCCGT CACCTCGCTT
GCCCCCGTGG CGCTCGGCGC CGAGCTTGCG CGTCTCTCCC CCGGCGAGCT GCTGCTGCCG
GAAACGCTGG ACGAGGACGA AGACCTCGCC GCCCTCCTCG CGCAATCGGG CGCGGCGCTG
ACGCGGCTTC CCGCCATCCG CTTCGAGAGC GGCCAGGCCG AGCGCCGCCT GAAGTCCCAT
CTCGGCGTCT CCGCGCTTGA TGGGTTCGGT GCCTTCGCCC GCGCCGAACT CGGCGCCATG
GGCGCGCTTC TCGATTATGT CGAGCTGACG CAGGTCGGCC GTATGCCGGC CCTCATGCCG
CCGCGCCGCG TCGCCGCCAC CGACACCATG GCGATCGACG CCGCCACCCG CGCCAATCTC
GAACTGGTGA GGACTCTGCA GGGCGAGACC GCCGGCTCCC TCCTCGCCAC CATGGACAGG
ACGGTGACGG GTGCCGGCGC GCGCGAGCTT GCCTCCCGTC TCGCCGCCCC TTTGACCGAT
CCCGCCGCGG TCAACCGCCG CCTCGATGCG GTTGAGTGGT TCCATGATGC GCGCGACATG
CGCGCCCGCC TCCGCGCCGG TCTCAAATCC GCGCCCGACA TCGCGCGCGC CCTCTCCCGC
CTCTCGCTCG GCCGTGGCGG CCCGCGCGAT CTCGCCGCCA TCGCCAATGG TCTCGCTGCC
GCGCATGGCC TCTGCGCCGC GCTTGATGGC GCTTCGCCCT CGCTCCTGCC GTTGCCGGAA
GAAATCGCGC GCGAATGCGA GGCGATGCGC GGCACCGCCG CGTCCCTCCA GTCCCGCCTC
GCCGCCATGC TGGCCGAAGA ACTGCCGCTC CTGGCCCGCG ACGGCGGCTT CATCGCAAGG
GGCGCGAGCC CCGAACTCGA CGAGACCCGC GCGCTGCGCG ACGACGCGCG CAAATTGATC
GCCGGGCTGC AGGCGAAATA TGCGGGCGAA AGCGGCATCG CCGCCCTGAA GATCCGCCAC
AACAATGTGC TCGGCTATTA CATCGAGGTG CCGCCCCGCC ACGGCGAAAA GCTCCTCGCG
CCGCCTTTCT CCGACAGCTA CATCCACCGT CAGACCATGG CGAATGCGAT GCGCTTCACC
ACGGCGGAGC TTGCGGGCCT CGCCAGCCGA ATCGCGGAAG CCGCCGGCCG CGCCCTCGAA
ATCGAACTCG CCCTCTTCGA CGAACTCGCC GCCGCGACGC TCCTTGAGGC GCCGTCTCTC
TCCCGCGCCG CCGAGGCGCT TGCCCGTCTC GATGCGACGG CGGCGCTGGC CGAGCTTGCC
GCCGAGCGGC GCTATGTCCG CCCCCGCCTC GATGCGAGCT TCGCCTTCGA TATTCGCGGC
GGCCGCCATC CGGTGGTCGA GGCCGCACTC GCCCGCACAG GCCAGGCCTT CGTGCCGAAC
GATACCAGCC TCTCGGCGGA GAGCGGCGGC GGCAAGCATA TCTGGCTGCT CACCGGCCCC
AACATGGCGG GTAAATCGAC CTTCCTCCGC CAGAACGCGC TCATCGCCAT CATGGCGCAG
ATGGGCTCCT TCGTGCCGGC GGACGAGGCG CATATCGGCG TTGTCGACCG CCTCTTCTCC
CGCGTCGGCG CGGCGGACGA TCTCGCGCGC GGCCGCTCCA CCTTCATGGT CGAAATGGTC
GAGACGGCGG CGATCCTCAA TCAGGCGGGC GAGCGTTCGC TGGTAATCCT CGATGAGATC
GGCCGCGGCA CCGCGACTTT CGATGGTCTC TCCATCGCCT GGGCAACCGT CGAACATCTC
CACGGCGTCA ACAAGTCGCG CGCCCTCTTC GCCACGCACT ACCACGAATT GACCGCGCTA
TCGGAAAAGC TCGCCCATCT CGCCAACGCC ACCATGCGCG TCAAGGAATG GCAGGGCGAT
GTCGTCTTCC TGCATGAAGT CGCGCCCGGC GCGGCGGATC GTTCTTATGG CATCCAGGTC
GCAAAACTCG CGGGCCTCCC CGCGCCCGTC ATCGCCCGCG CCCAATCCGT CCTCGCCGCA
TTGGAAGAAG GCGGCAACCA CGAAGCCCGC ACGAAACTGA TCGACGACCT GCCCCTCTTT
TCCGCCACCG CAAAACCCGC CCCGGCGGTA AAGGTGAGCG CCGCCGAAGA GGAGTTGAAA
AACCTCAACC CCGACGAACT CTCGCCGAAG CAAGCACTGG AACTTCTCTA CAAGCTGAAG
GCGCTGGCGG CGAAGGACGG CGAATAA
|
|---|
| Protein sequence | MSEPATSFTP EIPSALPSIP ADATPMMAQY LEIKARWPEA LLFYRMGDFY ELFFEDAVAA
SAALDIALTK RGKHLGEDIP MCGVPVHSHD AYLQRLIRKG FKVAVCEQVE DPAEAKKRGA
KSVVARAVAR LVTPGTLTED TLLDARAHNY LAALSRTGAE AGFGLAWVDV STGDFAVTSL
APVALGAELA RLSPGELLLP ETLDEDEDLA ALLAQSGAAL TRLPAIRFES GQAERRLKSH
LGVSALDGFG AFARAELGAM GALLDYVELT QVGRMPALMP PRRVAATDTM AIDAATRANL
ELVRTLQGET AGSLLATMDR TVTGAGAREL ASRLAAPLTD PAAVNRRLDA VEWFHDARDM
RARLRAGLKS APDIARALSR LSLGRGGPRD LAAIANGLAA AHGLCAALDG ASPSLLPLPE
EIARECEAMR GTAASLQSRL AAMLAEELPL LARDGGFIAR GASPELDETR ALRDDARKLI
AGLQAKYAGE SGIAALKIRH NNVLGYYIEV PPRHGEKLLA PPFSDSYIHR QTMANAMRFT
TAELAGLASR IAEAAGRALE IELALFDELA AATLLEAPSL SRAAEALARL DATAALAELA
AERRYVRPRL DASFAFDIRG GRHPVVEAAL ARTGQAFVPN DTSLSAESGG GKHIWLLTGP
NMAGKSTFLR QNALIAIMAQ MGSFVPADEA HIGVVDRLFS RVGAADDLAR GRSTFMVEMV
ETAAILNQAG ERSLVILDEI GRGTATFDGL SIAWATVEHL HGVNKSRALF ATHYHELTAL
SEKLAHLANA TMRVKEWQGD VVFLHEVAPG AADRSYGIQV AKLAGLPAPV IARAQSVLAA
LEEGGNHEAR TKLIDDLPLF SATAKPAPAV KVSAAEEELK NLNPDELSPK QALELLYKLK
ALAAKDGE
|
|---|
| |