| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3598 |
|---|
| Symbol | |
|---|
| ID | 5453617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3846511 |
|---|
| End bp | 3848775 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640879182 |
|---|
| Product | malic enzyme |
|---|
| Protein accession | YP_001414853 |
|---|
| Protein GI | 154254029 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0280] Phosphotransacetylase
[COG0281] Malic enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA AGCGCCGTCA ATTTACCGAC GAGGAAGCGC TCCTCTTCCA TTCGCAGGGC
AAGCCCGGGA AGCTCGAAAT CAACCCGACG AAGCCGATGG CGACGCAGCA CGACCTGTCG
CTCGCCTACA GCCCCGGCGT TGCGGTGCCG GTGCGCGCGA TCGCGGAGAA CCCGGACGCG
GCTTACGAAT ATACGACCAA GGGCAATCTC GTCGCGGTGA TCTCGAACGG CACGGCGATC
CTCGGGCTCG GCGATCTCGG CGCGCTCGCC TCGAAGCCGG TGATGGAAGG CAAGGCCGTC
CTCTTCAAAC GCTTCGCGGA TGTCGATTCC ATCGATCTCG AGATCGATAC CAAGGATGTC
GACGCCTTCA TCAATTCGGT GCGCTATCTG GGCCCGTCCT TCGGCGGCAT CAACCTTGAA
GACATTTCGG CGCCGGACTG CTTCGTGATC GAAAGCCGGT TGCGTGAGCT CATGGATATT
CCGGTCTTCC ATGACGACCA GCACGGGACC GCGATCATCA CCGCTGCCGG GCTCATCAAC
GCGCTCTTCC TTACCGGGCG CGACATCAAG GACATCAAGG TCGTCGTCAA CGGCGCGGGC
TCGGCGGGCA TTGCCTGCCT CGAACTCATC AAGGCGATGG GGCTGCCGCA TGACAACGCC
ATTCTCTGCG ACACCAAGGG CGTGATCTAC AAGGGCCGCA CCGAGGGCAT GAACCAGTGG
AAGTCGGCGC ATGCGGCGAC GACCGACGCG CGGACGCTGG AAGAAGCGAT GGTGGGCTGC
GACGTGTTCC TCGGCCTGTC GGCCAAGGGC GCGATCAACG CCAAGATGGT GGCGTCGATG
GCGCCGAAGC CGATCATCTT CGCGATGGCG AACCCCGATC CCGAGATCAC GCCGGAAGAA
GTGGCGCTGG TGCGCGACGA CGCCATCACC GCGACAGGAC GCAGCGACTA TGCGAACCAG
GTGAACAATG TTCTCGGCTT TCCCTATATC TTCCGCGGCG CGCTCGATGT GCGCGCGAGC
GCGATCAACG AGGACATGAA GATCGCCTGC GCCGAAGCTC TGGCGAAGCT TGCGCGCGAG
GATGTGCCGG ACGAAGTGGC GGCGGCCTAT CAGGGCGAGC GTCCGCGCTT CGGCCCGCAA
TACATCATTC CCGTGCCGTT CGACCCGCGC CTCATCCGCG AAATTCCGCC GGCGGTGGCG
AAGGCGGCGA TGGATTCCGG CGTTGCGCGG GCGCCCATCG TCGACATGGA AGCCTACAAG
AACCGCCTGT CGGCGCGGCT CAACCCGACG GCGGGCACGC TGCAGGTGAT CGTGGACAAG
GTGCGGCGCG ACCCGAAGCG CGTCGTCTTT GCCGAGGGCG AGGAAGAGCG CGTGATCCGC
GCGGCGCTTG CCTTCCGCGA TGCGGGGCTT GGCCACCCGA TCCTTGTCGG CCGCGACGAA
CAAGTGCGCG AGACGCTGAA GCAGATCGGC CTCGACCCGA AGACCGACCT CGACATCCGC
AACGCACGGA CCTCCGACAA GGTCGATTCG TATACGGAGT TTCTCTACAA GAAGCAGCAG
CGCAACGGCT ATCTCTATCG CGACTGCCAC CGGCTGGTGA GCAACGACCG CAACATCTTC
TCGGCCGTGA TGCTGGAACT GGGCGATGCC GACGCGCTGG TGACGGGCGT GACGCGGACC
TATTCGGTGG CGCTGGAAGA AGTGCGCCGG GTGATCGACG CCGTCGACCA TCGCCGTCCG
ATCGGCGTGA CGCTGGTCGT TGCGGGCGGG CGCACGGTGC TTGTGGCCGA TACGAACGTG
CATGAGATGC CGACCGGCGA AGAGCTTGCC GACATCGCGA CGCAGGCGGC GGAAGTGGCG
CGGCGGCTCG GCTATGAACC GCGCGTGGCG ATGCTCGCCA ATTCGAGCTT CGGCACGCAT
GCGCATGAAC GGCCCTCGAC CGTGCGCGAC GCGGTGCGCA TTCTCGACGA GCGGCAGGTC
GATTTCGAAT ATGACGGCGA GATGGCGGCC GATGTCGCGC TCAATCGCGA GACGATGGCG
CTTTATCCGT TCTGCCGGCT GAGCGACACG GCGAATGTGC TCGTGATGCC CGCGATCCAT
GCGGCGTCGA TCTCGACCAA GCTTCTGCGC GTGCTGGGCG GCTCGACGCT GATCGGGCCG
CTCCTCGTCG GCCTCAAGCG GCCGGTGCAG ATCGTGCCGA TGACGGCGAC GGTTTCCGAC
CTCGTGAACA TGGCGGCGCT GGCGGCTTAC GATCTTTATC GCTGA
|
|---|
| Protein sequence | MSKKRRQFTD EEALLFHSQG KPGKLEINPT KPMATQHDLS LAYSPGVAVP VRAIAENPDA
AYEYTTKGNL VAVISNGTAI LGLGDLGALA SKPVMEGKAV LFKRFADVDS IDLEIDTKDV
DAFINSVRYL GPSFGGINLE DISAPDCFVI ESRLRELMDI PVFHDDQHGT AIITAAGLIN
ALFLTGRDIK DIKVVVNGAG SAGIACLELI KAMGLPHDNA ILCDTKGVIY KGRTEGMNQW
KSAHAATTDA RTLEEAMVGC DVFLGLSAKG AINAKMVASM APKPIIFAMA NPDPEITPEE
VALVRDDAIT ATGRSDYANQ VNNVLGFPYI FRGALDVRAS AINEDMKIAC AEALAKLARE
DVPDEVAAAY QGERPRFGPQ YIIPVPFDPR LIREIPPAVA KAAMDSGVAR APIVDMEAYK
NRLSARLNPT AGTLQVIVDK VRRDPKRVVF AEGEEERVIR AALAFRDAGL GHPILVGRDE
QVRETLKQIG LDPKTDLDIR NARTSDKVDS YTEFLYKKQQ RNGYLYRDCH RLVSNDRNIF
SAVMLELGDA DALVTGVTRT YSVALEEVRR VIDAVDHRRP IGVTLVVAGG RTVLVADTNV
HEMPTGEELA DIATQAAEVA RRLGYEPRVA MLANSSFGTH AHERPSTVRD AVRILDERQV
DFEYDGEMAA DVALNRETMA LYPFCRLSDT ANVLVMPAIH AASISTKLLR VLGGSTLIGP
LLVGLKRPVQ IVPMTATVSD LVNMAALAAY DLYR
|
|---|
| |