| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3584 |
|---|
| Symbol | |
|---|
| ID | 5457017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3831089 |
|---|
| End bp | 3832330 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640879168 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001414839 |
|---|
| Protein GI | 154254015 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 90 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGCG TGAAGGCGCT CTTCGCGCTC GGCATTTCGC TGGCGCTCGC GGCTTGTTCG
ACAGGACAAC AGCAAACGCC GCCGCCGGTC GTGACGCCGC CCCCAAAGGT GGAGGTGGCA
CCGCCGCCCC AGACGCAGCC GCCGGCATTT TCCCGCGATC CTGCGAGGTT CTACACGCCC
GCCCACATGG CCGGGGAGAG GCCGGTGCGC GTCGCCCTGC TGCTGCCGTT CAATTCGTCG
CGCGAGGATG TGCGGACGCT TTCGAACGCG CTCTACAATG CCGCGCAACT CGCACTGTTC
GAGTTCGACG CGACGAACAT ATTGCTGATG CCGAAGGCTA CAGGCGGCAC GGCGGCCGGC
GCACAGCGCG TGGCGCGGGA GGCGCTCGAT GCCGGCGCGG ACCTCATACT CGGGCCGCTC
TTTGCCGAGG AAGTGACGGC GGTAGCGCGG CTTGCCCGGG ATGTGAGAGT GCCCGTGGTG
GCGTTCTCTT CCGACAGTTC GGTCGGCGGC AATGGCGTTC ATCTGCTGTC GTTCCCGCTC
GATCAGGATG TCGACCGGAT CGTGGATTAT ACAACGCTGC AGGGCATCAC GCGTTTTGCG
GCACTCTATC CCTATGGCGC TTATGGCGAG CGGGTGCGCG ACGCCTTTCA GCGCGCGGTA
TCAGCGCGGG CGGGGACGGT CGTCGCCAGC ACGAGCTATC CGGCGAGCCC GGAAGGCATG
TATGAGCCGG CGCAACGGAT TGCCGGCGCC TATGGCGGCG GGAACTATCA GGCCGTATTT
CTGCCCGAGG GCGGCGCGCA GCTTAAATCC ATGGCACCGC TGCTTCCCTA TTACGATGTC
GATCCGCGCG ACGTGAAATT TCTCGGCACG GGGCTCTGGG ACGACCCTTC GCTTGCCCGC
GAGCCGCCGC TTGCCGGTGC GTGGTTTCCC GCGCCGCCGC CGGAAGGCCA TGACCAGTTT
TTGACGCGCT ATCGCCGCGC CTATGGCGGG ACGCCGCCGC GCATCGCAAG CCTCGGCTAT
GACGGGGTGA GCCTCGCGAT TGCGCTTTCG ACACTGCCGG AAGAGAGCCG CTTCACGCCG
GAGGCGCTGA CCAATCCGGA CGGCTTCGCG GGCGTCGACG GGATTTTCCG TTTCATGCCG
GATGGACGAA CGGAACGCGG CCTTGCGGTT CTCGAGATGC GGCCGACGGG TGCCGTGGTT
ATCGATCCGG CGCCGACAAG CTTCCGGCCG CCGGTTTTCT AG
|
|---|
| Protein sequence | MTGVKALFAL GISLALAACS TGQQQTPPPV VTPPPKVEVA PPPQTQPPAF SRDPARFYTP
AHMAGERPVR VALLLPFNSS REDVRTLSNA LYNAAQLALF EFDATNILLM PKATGGTAAG
AQRVAREALD AGADLILGPL FAEEVTAVAR LARDVRVPVV AFSSDSSVGG NGVHLLSFPL
DQDVDRIVDY TTLQGITRFA ALYPYGAYGE RVRDAFQRAV SARAGTVVAS TSYPASPEGM
YEPAQRIAGA YGGGNYQAVF LPEGGAQLKS MAPLLPYYDV DPRDVKFLGT GLWDDPSLAR
EPPLAGAWFP APPPEGHDQF LTRYRRAYGG TPPRIASLGY DGVSLAIALS TLPEESRFTP
EALTNPDGFA GVDGIFRFMP DGRTERGLAV LEMRPTGAVV IDPAPTSFRP PVF
|
|---|
| |