Gene Plav_3563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3563 
Symbol 
ID5456842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3813423 
End bp3814679 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content59% 
IMG OID640879147 
Productintegrase family protein 
Protein accessionYP_001414818 
Protein GI154253994 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones85 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCACGG ACGCTGCCAT TAAGGCTTTG AGACCACGCG ATAAAATGTA CAAAGTGACG 
GACCGTGACG GGATGTACGT GTTGGTCTCA CCGACCGGCG CGTTGACCTT CCGCTTCGAC
TACCGTTTGA ACGGGCGCCG GGAAACGGTG ATTATTGGCA GGTACGGCCC AACGGGCGTT
TCGCTTGCGC GCGCCCGCGA GAAGCTGATC GAGGCCAAAC TGATGATTCA GGACGGCGTC
TCGCCTGCGT TCGAAAAGCG ACGCGAGAAG CGCCGGATCA AGGAAGCCAA GAGTTTCGGC
GAATTTGGCG AGCGCTGGCT GCAAGACGCG CGAATGGCCG ATAGCACCCG CGCCATGCGC
CGCACCATCT TCGAGCGCGA TATTCTGCCG ACATTCCGGA ACCGGCTCCT GCACGAGATT
CTGCCTGAGG ACCTGCGAGC GATGTGCGAG AAGGTGAAGG CGAGAGGCGC ACCGGCGACG
GCGGTCCATG TCCGGGACAT CGTGAAGCTG ATCTTTGCCT TCGCGATCTT GCACGGCGAG
AAGGTTTCCA ACCCAGCCGA CGAGGTTGGC CCATCCTCGA TCGCAACCTT CGTGCCGAAG
GATCGATCGC TATCCCCCTC GGAAATACGC ATCATGCTCA CCCAGCTCGA GCATGTCGCG
ACTTTGCCGA CGATACGCCT CGGAATGAAA CTGTTCCTGC TATCGATGGT GCGAAAGAGC
GAATTACAGG ATGCCGTGTG GGACGAAGTC GATTTCGAGA ACGCGGTTTG GTCGATCCCG
AAGGAGCGGA TGAAGCGCTC GAAGGCTCAC AACGTCTATC TCTCGCAGCA GATGCTCGAC
ATTTTCATCG CTCTCAAAAC CTGCGCGGGA AACTCGAAAT ACGTTCTGCC GTCACGTTAC
GACGCCGACG CCCCGATGTC GCGGGCGACG TTCAACCGGA TCACGGTGGC CGTGGTGGAG
CGCGCCAAGA AGGAAGGCTT GCCGCTGGAG GCATTTACGA TCCATGATCT CCGGCGAACC
GGCTCAACCT TGCTGAATGA GGTGGGCTTC AACAGCGACT GGATCGAGAA GTGTCTGGCG
CATGAGGATG GACGGTCCTC GCGGGGCATC TACAACAAGG CCGAATATGA ACACCAGCGC
CGGCATATGA TGCAGGAATG GTCCAATCTG GTGGATGCGT GGGTCGCTGG TCAGAAATAC
ACGCCGACCC TTTATCCGCC GAGGATGGAC CTGCTTACGC CCGAGTTTGA TGCCTGA
 
Protein sequence
MLTDAAIKAL RPRDKMYKVT DRDGMYVLVS PTGALTFRFD YRLNGRRETV IIGRYGPTGV 
SLARAREKLI EAKLMIQDGV SPAFEKRREK RRIKEAKSFG EFGERWLQDA RMADSTRAMR
RTIFERDILP TFRNRLLHEI LPEDLRAMCE KVKARGAPAT AVHVRDIVKL IFAFAILHGE
KVSNPADEVG PSSIATFVPK DRSLSPSEIR IMLTQLEHVA TLPTIRLGMK LFLLSMVRKS
ELQDAVWDEV DFENAVWSIP KERMKRSKAH NVYLSQQMLD IFIALKTCAG NSKYVLPSRY
DADAPMSRAT FNRITVAVVE RAKKEGLPLE AFTIHDLRRT GSTLLNEVGF NSDWIEKCLA
HEDGRSSRGI YNKAEYEHQR RHMMQEWSNL VDAWVAGQKY TPTLYPPRMD LLTPEFDA