| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3559 |
|---|
| Symbol | |
|---|
| ID | 5456874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3807409 |
|---|
| End bp | 3810234 |
|---|
| Gene Length | 2826 bp |
|---|
| Protein Length | 941 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640879143 |
|---|
| Product | helicase domain-containing protein |
|---|
| Protein accession | YP_001414814 |
|---|
| Protein GI | 154253990 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.895393 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 87 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGGGG GCGGCTTCGA CATCGGCGAT TGGTGCTGGC ACACGCGGCA GGCTACGCCT
TGCCGCGTGG TCGAGCGACT GGCGCTATGG GGTGAAGCGG CCTACCGTGT GTGGCTGCCC
TCGAAAGACG CCGTGCTCCG CGCACGGGCG ACGGAACTGG CGGTGCTTTC CAGCGTGCGG
CCCACGGTGG GGCAGATTCT GCACGCCACG GCGGCGGCAA AATTGCAGGA CGCGCTCGAA
GACAACCTCC TGCTGGCGCC CATCCAATCC AGCGTCATTC CGTTGCCTCA CCAGCTCTAC
GCGCTGAACC GTGCCGTCGG GCAGGACCGC ATCCGCTACC TGCTCGCCGA CGAAGTGGGT
CTGGGCAAGA CCATCGAGGC GGGCCTAGTG CTGCGCGAAC TGAAACTGCG CGGTCGCGTC
AAGCGCATCC TGGTGGTCGC ACCCAAAGGC TTGGTGCGGC AATGGCAGGC GGAAATGCGC
CAGCATTTCG GCGAGCCGCT CCACTTCGTA GATCCTTCAT CGCTTGCGGC CTTGCGGCAA
TGGCGCGGGG ACAGCGCGGA AGACAATGCG TGGCGGATGC ACGACCAGGT AATCTGCGCG
CTGGATTCGG TGAAGCCGCT GGAATCGCGG CGTGGCTGGA GCCTGGACCA GATCCAGACC
TACAACCGCG AACGCTTCGA GGATCTCGTG TCGGCGGCCT GGGATCTGGT CATCATCGAC
GAAGCACACC GCATGGGCGG CAGCACCGAA CAGGTGGCGC GCTACAAGCT GGGCGCAGCG
CTGGCGGAAG CCTCGCCCTA TTTGTTGCTG CTGTCGGCCA CGCCGCACCA GGGCAAGACC
GACCAGTTCA TGCGCCTCAT GCAGTTGCTG GACCGGGACG CCTTCCCCGA TGAAGGCAGC
GTCAGCCACG AGCGCGTGCA GCCCTTTGTG ATCCGCACCG AAAAGCGCGC TGCGATCAAT
GCCGAAGGCC AGCCGCTGTT CCGACCCCGG CTCACGCGCT TGCACGCGGT CGCCTGGCAG
GCTCGGCACG CGGCGCAGCA GCAGTTGTAC GAAGCCGTCA CCGACTATGT GCGCCATGGC
TACAACCAGG CTCTGGCGGC CAAGCAGCGC CATGTCGGCT TTCTGATGAT CCTGATGCAG
CGACTGGTGA CATCCAGCAC CGCCGCAATC CGCGCCACGC TGGAAAAGCG CCAGGCGGTG
CTGGACACGC CGCAGACCCA AGCGCGCCTG TTCGACACGC TCAGCCCGGA CGAATGGGCC
GATCTCGACG GCGAAGCGCA GGTAGACCTG GCGCTGCAAG CCAATGGTCT GGAGCTGGAG
AAGTCGGAGG TTGAGACGCT ACTGGCGCTG GCGCGCTCCA CCGAGGCCGC CGGGACGGAC
GCCAAGGCCG AAAGCCTGCT GGAGCTGATC TACAAGCTGC AACAGGAAGA AGGCGACCCG
GCGCTGAAGG TGCTGGTGTT CACCGAGTTT GTGCCCACGC AGGCCATGCT GGCGGACTAT
CTGGAAAGCC GGGGCTTCAC GGTCGCCACG CTCAACGGCG GCATGGACAT GGAAGCCCGC
ACCCGGACTT TGCAGACTTT CGCAGGGGAC GCTCGCGTGC TGATTTCCAC CGACGCGGGC
GGCGAAGGTC TGAACCTTCA ATTCTGCCAC GTCATCGTCA ATTTCGACAT GCCGTGGAAC
CCGATGCGCA TTGAGCAGCG CATCGGCCGC GTGGATCGTA TCGGTCAGAA GCATGTCGTG
CGGGCGTTGA ATTTCGTGCT GGAAGACACG GTGGAACACC GTGTCCGGCA GGTACTGGAG
GAGAAGCTCG CCGTCATCGC CGAGGAGTTC GGCGTGGACA AGGCCGCGGA CGTCATGGAC
TCGGCGGAAG TGGAGCCGGT GTTCGATGAA CTGTTCGTGC AGAGCCTCCA GCATCCCGAA
GCCATCGAGC GCGAATGCGA CAGCGTGGTC TCCCAGTTGC GGACCACGCT GGCGGAATCG
AACCGGAACA GCGATCTGCT GGCCGTGCCG CACGATCTCG ATGCGGACCA GGCCCGCAAG
TGGCGTGACC ACCCGGCTCA ATTCTGGCTG GAACGCGCCG TCGTCAACGG GCTGGCAGTA
CGCGGCGGAT CGGCGACCCA AGATGGCAGC CTCTGGCACG TGCGCTGGGC TGATGGTGCC
GAGACGCCAC AGGCCTGCTT CGACGCTCGC GCGGCAGGCG AAAACCCGGC GGCTGAATGG
CTGACGATGG AAGATCCGCG CGCGCGGGCG ATCATCGGCG ACGTGCCGCG CTTCGTTGCG
GGCCAGCCTC TGCCGGTGAT CCGGGTGACG GGCCTGCCCG ACTCGGTCAA CGGTATCTGG
TCGCTGTGGG AGATCGGGCT GGCGGCGCCG GGTGCGAACC GCAAGCGCTT CCTGCCAGTC
TTCATAAATG ACGAAGGCCG CCCCTTTGTG CCTACCGCCA AGCGGGTTTG GGATTTGCTG
CTGACGGAAA CCGTATCCGT GCAGTCGGTG GCGGACGCGG AGGCTTCGGT GGGCTGGTTC
AAGGCATCGT TCGCGGTGGC CGGCGCGCAG GGTGAAGCCC TGTTCGCGGC GCTGGCGGAC
GAACATCGCG CCCGTATCAA GGAAGAGCGA GATCGCGCCA CCTACGCCTT CGACGTTCGC
AATCAGGCCA TTGGACGCAT CGGTCTACCG GCCGTGCGCC AGTTCCGCCG CCGCCGTCTG
CAATCCGAGC ACGAGGCACG TCTGGCCGCG CTGGACGATA TGCAATCCAG CGTGCCGGAG
CTGAATGCCG TGGCGATGGT GCGGATTGAC GCCGCAGCCG GCAAAACCAG CGAGCGTGCG
TCATGA
|
|---|
| Protein sequence | MTGGGFDIGD WCWHTRQATP CRVVERLALW GEAAYRVWLP SKDAVLRARA TELAVLSSVR
PTVGQILHAT AAAKLQDALE DNLLLAPIQS SVIPLPHQLY ALNRAVGQDR IRYLLADEVG
LGKTIEAGLV LRELKLRGRV KRILVVAPKG LVRQWQAEMR QHFGEPLHFV DPSSLAALRQ
WRGDSAEDNA WRMHDQVICA LDSVKPLESR RGWSLDQIQT YNRERFEDLV SAAWDLVIID
EAHRMGGSTE QVARYKLGAA LAEASPYLLL LSATPHQGKT DQFMRLMQLL DRDAFPDEGS
VSHERVQPFV IRTEKRAAIN AEGQPLFRPR LTRLHAVAWQ ARHAAQQQLY EAVTDYVRHG
YNQALAAKQR HVGFLMILMQ RLVTSSTAAI RATLEKRQAV LDTPQTQARL FDTLSPDEWA
DLDGEAQVDL ALQANGLELE KSEVETLLAL ARSTEAAGTD AKAESLLELI YKLQQEEGDP
ALKVLVFTEF VPTQAMLADY LESRGFTVAT LNGGMDMEAR TRTLQTFAGD ARVLISTDAG
GEGLNLQFCH VIVNFDMPWN PMRIEQRIGR VDRIGQKHVV RALNFVLEDT VEHRVRQVLE
EKLAVIAEEF GVDKAADVMD SAEVEPVFDE LFVQSLQHPE AIERECDSVV SQLRTTLAES
NRNSDLLAVP HDLDADQARK WRDHPAQFWL ERAVVNGLAV RGGSATQDGS LWHVRWADGA
ETPQACFDAR AAGENPAAEW LTMEDPRARA IIGDVPRFVA GQPLPVIRVT GLPDSVNGIW
SLWEIGLAAP GANRKRFLPV FINDEGRPFV PTAKRVWDLL LTETVSVQSV ADAEASVGWF
KASFAVAGAQ GEALFAALAD EHRARIKEER DRATYAFDVR NQAIGRIGLP AVRQFRRRRL
QSEHEARLAA LDDMQSSVPE LNAVAMVRID AAAGKTSERA S
|
|---|
| |