Gene Plav_3553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3553 
Symbol 
ID5453961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3796243 
End bp3796623 
Gene Length381 bp 
Protein Length126 aa 
Translation table11 
GC content57% 
IMG OID640879137 
Productphage transcriptional regulator, AlpA 
Protein accessionYP_001414808 
Protein GI154253984 
COG category 
COG ID 
TIGRFAM ID[TIGR01764] DNA binding domain, excisionase family 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.654297 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTAT CCGGCGCCTC CATGCGCCAT TACGCTCGCC TGAGCGGATC AACCGCTATT 
GGCGATGACG AAAACCATCA TCTTATCGCC TTTCTAGCTT GCCGATTCTT GCCAACTTAT
GCCAGTGTAA CACAAAATAA CTACCAACAA GCCGGCAATC CCATGATCGA GCAGTCCGAT
GAAATCCTCA CCATCGAGGA AGTCGCCACC TACCTGAAAG CAGGTCGGCG CACGGTCTAT
CGCCTTGCGG CCAATGGCCA GCTTCCGGCG TTCAAGCTAG GCGGTGTGTG GCGCTTCCGC
CGCGCCGAGC TGGAACGATG GATCGCCGCA CGCATCGGTG AGCAGGATGA AAAGCCCAAG
CCGGACGAGG GGAGGCAATG A
 
Protein sequence
MSVSGASMRH YARLSGSTAI GDDENHHLIA FLACRFLPTY ASVTQNNYQQ AGNPMIEQSD 
EILTIEEVAT YLKAGRRTVY RLAANGQLPA FKLGGVWRFR RAELERWIAA RIGEQDEKPK
PDEGRQ