Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3548 |
Symbol | |
ID | 5453870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3792170 |
End bp | 3792859 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640879132 |
Product | conjugal transfer protein TrbF |
Protein accession | YP_001414803 |
Protein GI | 154253979 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3701] Type IV secretory pathway, TrbF components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 70 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTCT TCAAACGACC CGCCGCCCAC TATGGGAAAT CGCCCGAACC CGAAACACCC TATCAGCGCG CCGCGCAGGT CTGGGACGAT CGCATGGGTT CGGCCCGCGT CCAGGCCAGG AACTGGCGCA TCATGGCATT CGGCTCACTT TTCCTGTCGG CCGGCTTCGC CGCCGCGCTG GTCTGGCAGT CGGCGCGCGG CACCGTCGTT CCCTGGGTGG TGCAGGTCGA TCGGCTCGGT CAGGCGCAGT CCGTAGCACC GGCGTCGGCC GACTACCGGC CGACCGATCC GCAGGTGGCC TGGCATCTTG CCCGCTTCAT CGAGCAAGTC AGAAGCATCC CGGCCGATCC GATCATCGTG CGCCAGAACT GGCTGCGCGC CTATGACTGG ACCACGGATC GCGGCGCCGG CGCGCTCAAC GACTATGCCC GCACCAACGA TCCCTTCACC AAGGTCGGCA AACAGCAGAT CGCCGTCGAG GTTTCGAGCG TCATCCGCGC ATCGGCGGAT TCCTTCCGCG TGGCCTGGAC CGAGAAACGG TACGAGAATG GCCAGCTCGC GGGCACGGAG CGATGGACCG CGATCCTCAC CATCGTCATC CAGACGCCGC GCGACGCCGA CCGGCTGCGC GCCAATCCGC TCGGCATCTA CATCAACGCT ATCAACTGGT CGCGGGAGAT GTCCCAATGA
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Protein sequence | MSLFKRPAAH YGKSPEPETP YQRAAQVWDD RMGSARVQAR NWRIMAFGSL FLSAGFAAAL VWQSARGTVV PWVVQVDRLG QAQSVAPASA DYRPTDPQVA WHLARFIEQV RSIPADPIIV RQNWLRAYDW TTDRGAGALN DYARTNDPFT KVGKQQIAVE VSSVIRASAD SFRVAWTEKR YENGQLAGTE RWTAILTIVI QTPRDADRLR ANPLGIYINA INWSREMSQ
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