Gene Plav_3548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3548 
Symbol 
ID5453870 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3792170 
End bp3792859 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content66% 
IMG OID640879132 
Productconjugal transfer protein TrbF 
Protein accessionYP_001414803 
Protein GI154253979 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3701] Type IV secretory pathway, TrbF components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTCT TCAAACGACC CGCCGCCCAC TATGGGAAAT CGCCCGAACC CGAAACACCC 
TATCAGCGCG CCGCGCAGGT CTGGGACGAT CGCATGGGTT CGGCCCGCGT CCAGGCCAGG
AACTGGCGCA TCATGGCATT CGGCTCACTT TTCCTGTCGG CCGGCTTCGC CGCCGCGCTG
GTCTGGCAGT CGGCGCGCGG CACCGTCGTT CCCTGGGTGG TGCAGGTCGA TCGGCTCGGT
CAGGCGCAGT CCGTAGCACC GGCGTCGGCC GACTACCGGC CGACCGATCC GCAGGTGGCC
TGGCATCTTG CCCGCTTCAT CGAGCAAGTC AGAAGCATCC CGGCCGATCC GATCATCGTG
CGCCAGAACT GGCTGCGCGC CTATGACTGG ACCACGGATC GCGGCGCCGG CGCGCTCAAC
GACTATGCCC GCACCAACGA TCCCTTCACC AAGGTCGGCA AACAGCAGAT CGCCGTCGAG
GTTTCGAGCG TCATCCGCGC ATCGGCGGAT TCCTTCCGCG TGGCCTGGAC CGAGAAACGG
TACGAGAATG GCCAGCTCGC GGGCACGGAG CGATGGACCG CGATCCTCAC CATCGTCATC
CAGACGCCGC GCGACGCCGA CCGGCTGCGC GCCAATCCGC TCGGCATCTA CATCAACGCT
ATCAACTGGT CGCGGGAGAT GTCCCAATGA
 
Protein sequence
MSLFKRPAAH YGKSPEPETP YQRAAQVWDD RMGSARVQAR NWRIMAFGSL FLSAGFAAAL 
VWQSARGTVV PWVVQVDRLG QAQSVAPASA DYRPTDPQVA WHLARFIEQV RSIPADPIIV
RQNWLRAYDW TTDRGAGALN DYARTNDPFT KVGKQQIAVE VSSVIRASAD SFRVAWTEKR
YENGQLAGTE RWTAILTIVI QTPRDADRLR ANPLGIYINA INWSREMSQ