Gene Plav_3545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3545 
Symbol 
ID5455654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3789734 
End bp3790513 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content65% 
IMG OID640879129 
Productconjugal transfer protein TrbJ 
Protein accessionYP_001414800 
Protein GI154253976 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5314] Conjugal transfer/entry exclusion protein 
TIGRFAM ID[TIGR02780] P-type conjugative transfer protein TrbJ 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACGC TTCGTTCACG CCCGCGCGCG ATGTCGCTCG CGGCCTTCAT CCTGGCGATA 
CCGCTCGCCG CATCGCCGGT GCTGACCGCG CCAGCGCACG CGCAATTCGG CTTCGGCGGT
ATCGTCTATG ACCCTACCAA CTACGCCCAG AACGTCCTGA CGGCGGCGCG GTCCCTCGAG
CAGATCAACA ACCAGATCCG CTCGCTTCAA AACGAGGCGC AGAGCCTCAT CAACCAAGCC
AAGAATCTGG CGAACCTGCC GTACTCGGCG CTCCAGCAGA TTCAACAGAA CGTCCAACGC
ACCCAGCAGC TCCTCGGCCA GGCGGAGAAC ATCTCTTTCG ACGTCCAGAA CGTCGATCGG
ATGTTCCAGC AGCAATATGG CAGCGTCTCA CTGTCGTCGT CGGACGCCAA GCTCATCACC
GACGCTCGCT CGCGCTGGCA GAACACCGTC GGCGGCTTGC AGGACGCCAT GCGCATTCAG
GCCGGTGTCG TCGGCAATAT CGACAGCAAT CGCACGCAGA TGTCGAACCT CGTCAGCCAG
AGTCAAGGCG CGCAGGGTGC GTTGCAGGCG ACACAGGCCG GCAATCAGCT TCTCGCGCTG
CAATCGCAGC AGCTCTCCGA CCTGATCGCG CTGATCTCCG CCAACGGCCG GGCCACGGCG
CTGACTGACG CGGAGCGCGC GGCGGCGGCT GATCAGGGCC GGGAGCAGCG CCGCCGCTTC
CTCACGCCGG GCGCGGGCTA TCAGCCCGGC AACGCGCAGA TGTTCGGCAA CGGCAACTGA
 
Protein sequence
MNTLRSRPRA MSLAAFILAI PLAASPVLTA PAHAQFGFGG IVYDPTNYAQ NVLTAARSLE 
QINNQIRSLQ NEAQSLINQA KNLANLPYSA LQQIQQNVQR TQQLLGQAEN ISFDVQNVDR
MFQQQYGSVS LSSSDAKLIT DARSRWQNTV GGLQDAMRIQ AGVVGNIDSN RTQMSNLVSQ
SQGAQGALQA TQAGNQLLAL QSQQLSDLIA LISANGRATA LTDAERAAAA DQGREQRRRF
LTPGAGYQPG NAQMFGNGN