| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3544 |
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| Symbol | |
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| ID | 5453542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3787278 |
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| End bp | 3789728 |
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| Gene Length | 2451 bp |
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| Protein Length | 816 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640879128 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_001414799 |
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| Protein GI | 154253975 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC TTGCCGAATA TCGCCGCACC GCAACCCGCC TCGCTGACTA TCTGCCCTGG
GCCGCGCTCG TCGCCGAGGG CGTCGTGCTC AACAAGGACG GCAGCTTTCA GCGCACGGCG
CGGTTCCGCG GCCCTGATCT GGACTCCGCG GTCGCCGCCG AACTGGTCGC CGTCGCCGGG
CGGCTCAACA ACGCATTCCG TCGTCTCGGA TCGGGTTGGG CCATCTTCGT CGAGGCGCAG
CGGCACGAGG CGTCGATCTA TCCAGCGGAC CTGTTTCCCG ACGCCGCCGC AGCGCTTCTC
GATGCCGAGC GCAAAGCCGA TTTCGAGGAG GCCGGCGCGC ATTACGTCTC CGGCTACTAT
CTCACCATCA CCTATCTGCC GCCGGCCGAG GATGCCGCGC GCACCGAAGC CTGGCTCTAT
GAGGGCCGCG AACGTGCTGG CATCGATCCG AAGGAAATCC TGAACACCTT TGTCGACCGC
ACCGATCGCG TGCTGGCGCT GCTCGACGGC TTCATGCCGG AATGCCAGTG GCTCGATAGC
AGCGAGACGC TGACATATCT CCATTCGACC GTCTCGACCA AACGGCACCG CGTCCGTGTG
CCCGAAACGC CGGTCTATCT CGACGCGCTG CTCGCCGACC AACCGCTCAC CGGCGGCCTG
GAGCCGCGTC TCGGAACCGC GCATCTGCGC GTTCTCACCA TTGTCGGTTT CCCGACCGCG
ACCACGCCCG GCATCCTCGA CGATCTCAAT CGGCTCGCCT TTCCCTATCG CTGGTCGACG
CGCGCCATCC TGCTCGACAA GACCGACGCG ACCAAGCTGC TGACCAAAAT CCGCCGCCAA
TGGTTCGCGA AGCGCAAAAG CATCGCCGCG ATCCTGAAAG AGGTGCTGAC CAACGAGGCG
TCCGCGCTGG TCGATACCGA CGCCTCGAAC AAGGCGGCGG ACGCCGATCT CGCCCTCCAG
GAACTCGGCG CTGACTACGC CGGCCAATCC TATGTCACCG CGACGATCGC GGTATGGGAC
AACGATCCCC GAGTTGCCGA CGAGAAGCTT CGCCTCGCCG AGAAAGTCAT CCAGGGCCGC
GACTTCACGG CCATGACTGA AACGATCAAT GCCGTCGATG CCTGGCTGGG CTCATTGCCG
GGGCATGTTT ACGCCAACGT GCGCCAGCCC CCGATTTCGA CGCTGAATCT CGCCCACATG
ATCCCGCTCT CGGCGGTGTG GGCGGGGCCG GAACGGGACG AGCATTTGGG TAGCTCCCCC
TTGCTGTTCG GCAAGACCGA AGGCTCGACC CCGTTCCGGT TTTCTCTCCA TGTCGGCGAC
GTCGGTCACA CGCTCGTCGT CGGCCCGACC GGCGCCGGCA AATCGGTGCT CCTCGCCATC
ATGGCCTTGC AGTTCCGGCG CTATGCCGGT GCCCAGGTCT TCGCCTTCGA CTTCGGCGGT
TCGATCCGCA CCGCCGCGCT CGCCATGGGC GGTGATTGGC ACGATCTCGG CGGCGATCTC
ACCGAGGGCG TGGACTCCTC GGTCTCGCTG CAACCGCTCG CGCGCATTCA CGACACGCCC
GAACGCGCCT GGGCGGCCGA CTGGATCGTC GCCATCCTGA TCCGCGAGGG CATCGCAATC
ACCCCCGAGG TGAAGGAGCA CCTCTGGTCG GCGCTGACCT CGCTGGCGTC GGCGCCGGTC
GAGGAACGCA CGATCACCGG CCTCACGGTG TTGCTCCAAT CGAACGACCT GAAGCAGGCT
CTGCGACCGT ATTGCGTGGG CGGCCCCTAT GGGCGGCTAC TCGACGCCGA GGCCGAACAT
CTCGGCTCGG CATCGGTGCA GGCGTTCGAG ATCGAGGGAC TGGTCGGGAC TGGCGCGGCA
CCCGCCGTCC TCGCCTATCT CTTCCATCGC ATCGGCGACC GTCTCGACGG CTCGCCGACG
CTGCTCATCA TCGACGAGGG CTGGCTCGCA CTCGATGACG ATGCCTTCTC CGGGCAATTG
CGCGAATGGC TGAAGACGCT GCGCAAGAAA AACGCCAGCG TCATCTTCGC CACGCAGTCG
CTGTCCGACA TCGACAACAG CAACATCGCC CCGGCCATCA TCGAGAGCTG CCCGACAAGG
CTGCTCCTGC CGAACGAACG CGCGATCGAG CCGCAGATCA CGGAGATCTA TCGGCGCTTC
GGTCTCAACG ACCGCCAGAT CGAAATCCTC GCGCGGGCCA CGCCCAAGCG CGACTATTAC
TGCCAGTCGC GGCGCGGCAA TCGCCTGTTC GAGCTGGGCC TCTCCGAAGT CGGTCTCGCG
CTCGCCGCCA CCTCCTCCAA GACCGACCAG TCCGAGATCG CGCGCACCGT CGCCGAGCAT
GGCCGCGAGG GCTTTCTCGC CGCCTGGCTG CGCCTGCGCG GCGCCGAGTG GGCCGCAGAC
CTCATCCCTG ACCTCACGAA CCTCACCCCC CAGCAGTCCG AGAAGGAGTA A
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| Protein sequence | MMNLAEYRRT ATRLADYLPW AALVAEGVVL NKDGSFQRTA RFRGPDLDSA VAAELVAVAG
RLNNAFRRLG SGWAIFVEAQ RHEASIYPAD LFPDAAAALL DAERKADFEE AGAHYVSGYY
LTITYLPPAE DAARTEAWLY EGRERAGIDP KEILNTFVDR TDRVLALLDG FMPECQWLDS
SETLTYLHST VSTKRHRVRV PETPVYLDAL LADQPLTGGL EPRLGTAHLR VLTIVGFPTA
TTPGILDDLN RLAFPYRWST RAILLDKTDA TKLLTKIRRQ WFAKRKSIAA ILKEVLTNEA
SALVDTDASN KAADADLALQ ELGADYAGQS YVTATIAVWD NDPRVADEKL RLAEKVIQGR
DFTAMTETIN AVDAWLGSLP GHVYANVRQP PISTLNLAHM IPLSAVWAGP ERDEHLGSSP
LLFGKTEGST PFRFSLHVGD VGHTLVVGPT GAGKSVLLAI MALQFRRYAG AQVFAFDFGG
SIRTAALAMG GDWHDLGGDL TEGVDSSVSL QPLARIHDTP ERAWAADWIV AILIREGIAI
TPEVKEHLWS ALTSLASAPV EERTITGLTV LLQSNDLKQA LRPYCVGGPY GRLLDAEAEH
LGSASVQAFE IEGLVGTGAA PAVLAYLFHR IGDRLDGSPT LLIIDEGWLA LDDDAFSGQL
REWLKTLRKK NASVIFATQS LSDIDNSNIA PAIIESCPTR LLLPNERAIE PQITEIYRRF
GLNDRQIEIL ARATPKRDYY CQSRRGNRLF ELGLSEVGLA LAATSSKTDQ SEIARTVAEH
GREGFLAAWL RLRGAEWAAD LIPDLTNLTP QQSEKE
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