Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3538 |
Symbol | |
ID | 5455481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3781290 |
End bp | 3783029 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640879122 |
Product | hypothetical protein |
Protein accession | YP_001414793 |
Protein GI | 154253969 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGATG ACCACGAGTT TCGTGTTCGG CCTGGGCGCA TCCGGTCAAC CCGTGCGCAG TCGGCTCGGC CCTTCATCGC GCAGGCGCTG GCCGCCGCGA AGAAGGCGGG CGGCGGCGTC TCGCGCTCCG GGCGCGTCGT TGCCGCCAAT CGCTCGCGCT TCGGCCGAGG CCAGCGCGCC AGCATCCAAG CGAACCGCCT CATCACAGCG CGCACGCGCG GCGCTGTCAT CAAGGCCCGC GTCGTGCGGC GCTCCGGCCG CACCGCGCCG CTCGGCACGC ATCTCGATTA TCTCCGCCGC GACGGCGTGA CCCGTGATGG AGAAAAGGCC CGACTGTTCG GGCCGGGAAC GGAGGAAGCT GATGGCCGCG CCTTCTCCGG GCGATGCGAA GATGATCGCC ATCATTTCCG CTTCATCGTC TCACCGGACG ACGCCGTGGA GATGTCGGAC CTCAAGTCCT TCACCCGCGA TCTTGTCGGC CAGATGGAAA GGGATCTGGA CACGCGGCTC GATTGGGTTG CGGTCGATCA CTGGAACACC GAGCATCCTC ACGTCCATCT AATCGTGCGC GGCGTCCGCG ACGACGGCCA GGACCTCGTG ATCTCGCGCG ACTACATCAA GGAGGGCATG CGCGATCGCG CGCGTGACCT CATCACACAA GAGCTTGGCC CGCGCACGGA TCTCGATATT CGCCGCACGC TCGAACGCCA GATCGAGGCG GAGCGCTGGA CGCAACTCGA TCGGCAGCTT GTCCGCGACG CGGGAAAGAC CGGCGTCATC GATGTCGCCC CGCAGGTCGG TCGCCAGCCC GACGCCTACG CCGTCGAGAA GGTCGGCCGC CTGCGCAAAC TCGCAGCCCT CGGCCTCGCC AGTGAAGTCG GACCTGGCCA GTGGATGATC GACGATCAGG CTGAGGTGAC GCTGCGCCAG CTCGGCGAAC GCGGCGACAT CATCAAGCGC ATGCACCGCG CGCTCACCGA ACGCGGTATA GACCGCGGCT CGGGCAACTA CGTCCTGGCA GGGGAAAGCC TCGATGTGCC GGTCATCGGC CGTCTGGTCG AGCGCGGCCT CGATGACGAG CTGAAGGGAA CGGCCTACGC CGTGGTCGAC GGCGTCGATG GTCGGACCCA CCACATCCGC TTGCCGCATC TCGATGCGGC GGGGGACAGC GCGCCGGGCT CGATCGTCGA GCTGCGCACC TTCGAAGATG CTCGCGGCGA ACGCCGCGTC GCGCTCGCCG TCCGCTCCGA TCTCGATCTC AAGCATCAGG TGAACGCCTC GGGCGCGACC TGGCTCGACC GGCAATCCAT CGCCCGCGAA CCCCTCGCCA TGTCGGAGGG CGGCTTCGGC GCCGAGGTGC GGCAGGCGAT GCGACAACGG GCGGAGCATC TGGTCCACGA AGGTCTCGCC GAGCAGCAAG GCCGCCGCGT CATCTTCAGC CGCAACCTGA TCGAGACGCT TCGGCGCCGT GAGGTCGACG CCGTTGCCGA CCGGCTCGCG AAGGAGACAG GCCAGCCGTT CAAAGCGGCC GGCAATGGCG AATATGTCGC CGGCACCTAT CGCCAGCGCA TGACGCTCGC ATCCGGCCGC TTCGCGATGA TCGATAACGG CCTCGGCTTC CAGCTCGTGC CTTGGTCGCC GTCCCTCGAA AGCCAGCTCG GCAAACACGT CTCCGGGGTC GCCCGCGGAG ACGGCGGTGT CGACTGGAGC TTCGGCCGCA AGCGGGGGCT CGGCCTCTAA
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Protein sequence | MADDHEFRVR PGRIRSTRAQ SARPFIAQAL AAAKKAGGGV SRSGRVVAAN RSRFGRGQRA SIQANRLITA RTRGAVIKAR VVRRSGRTAP LGTHLDYLRR DGVTRDGEKA RLFGPGTEEA DGRAFSGRCE DDRHHFRFIV SPDDAVEMSD LKSFTRDLVG QMERDLDTRL DWVAVDHWNT EHPHVHLIVR GVRDDGQDLV ISRDYIKEGM RDRARDLITQ ELGPRTDLDI RRTLERQIEA ERWTQLDRQL VRDAGKTGVI DVAPQVGRQP DAYAVEKVGR LRKLAALGLA SEVGPGQWMI DDQAEVTLRQ LGERGDIIKR MHRALTERGI DRGSGNYVLA GESLDVPVIG RLVERGLDDE LKGTAYAVVD GVDGRTHHIR LPHLDAAGDS APGSIVELRT FEDARGERRV ALAVRSDLDL KHQVNASGAT WLDRQSIARE PLAMSEGGFG AEVRQAMRQR AEHLVHEGLA EQQGRRVIFS RNLIETLRRR EVDAVADRLA KETGQPFKAA GNGEYVAGTY RQRMTLASGR FAMIDNGLGF QLVPWSPSLE SQLGKHVSGV ARGDGGVDWS FGRKRGLGL
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