| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3535 |
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| Symbol | |
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| ID | 5455781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3779302 |
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| End bp | 3779847 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640879119 |
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| Product | conjugal transfer protein precursor |
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| Protein accession | YP_001414790 |
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| Protein GI | 154253966 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACGCGCG CCGGTCTCTT CCTCGTCATG GCTCTCGCGA CCACGGGGAT CAGCTATCCG
GCGCTCACCC CGTTGCCGAT CAAGCTCCTG TGGAACGCAT CGGCGAGCGC CCCCATCGGC
TTCTACACGA TCGACGTCGA TGGCCCGTTC GACGTCACCG ATCTCGTTGC GGTCGATGCG
CCCGAGCCGC TCGCGACCTT CATGGCCGAA CGCGGCTATC TTCCCAAAGG CGTCCCACTG
CTGAAGCGCA TTCTCGGCGT TTCCGGGCAG ACCGTTTGCC GCTCGAACCT CTCCGTCACG
ATCGACGGCG TCGACATGGG CGATGCGCTA CCGCGTGATC GCGCCGCGCG CGACCTCCCG
GTCTGGCAGG GCTGCCGCCG TATCCCGACC GGCGCAGTCT TCCTCATGAA CTGGCAGGTC
CGCGACAGCC TGGACGGTCG CTATTTCGGC CTGACCTCCA CTGACCAGAT CATCGGCCGC
GCCGTCCCCC TGTGGACAGA CGAGGACGGA ACGGGCCGCT TCGAATGGCG CGCACCGACG
CGATGA
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| Protein sequence | MTRAGLFLVM ALATTGISYP ALTPLPIKLL WNASASAPIG FYTIDVDGPF DVTDLVAVDA
PEPLATFMAE RGYLPKGVPL LKRILGVSGQ TVCRSNLSVT IDGVDMGDAL PRDRAARDLP
VWQGCRRIPT GAVFLMNWQV RDSLDGRYFG LTSTDQIIGR AVPLWTDEDG TGRFEWRAPT
R
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