Gene Plav_3501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3501 
Symbol 
ID5454502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3747676 
End bp3748689 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content62% 
IMG OID640879086 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionYP_001414757 
Protein GI154253933 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01296] aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value0.465584 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCGA ACCCCGTCGT CGCCATTGCG GGCGCGACCG GCGCCGTGGG CGTCGAGATG 
ATCCGCTGCC TCGAAGAGCG CAACTTCCCG GTGAAGGAGC TGAAGCTCCT TGCCAGTGCG
CGTTCGGCGG GCAAGACCAT GAAATTCCGG GGCAAGGATA TCGTCGTCGA GGAACTGACC
GAAGCGAGCT TCAAGGGCGT CGACATCGCC TTCTTCTCGG CGGGGGGCGG CATTTCGCGG
AAGTTCGCAC AGGCAGTGAA GGAGGCGGGC GCGGTGATGA TCGACAATTC GTCGGCCTAC
CGCATGGACC CGAACGTGCC GCTCGTCATT CCGGAGATCA ATCCGGAAGC GGCGCTTCAC
CACAACGGCA TCATCGCCAA TCCGAACTGT TCGACCATCA TCGCGATCAC GCCGCTCTGG
CCGATCCACA AAGTGAACCG CGTGAAGCGG CTCGTCGCGG CGACCTATCA GGCGGCCTCA
GGCGCGGGCG CGGCGGCGAT GGAAGAGCTC GAACAGGCGA CGCGTGCGTT TCTCTCGGGC
GAGCCCTTCG AGCAGAAGAT CATTCCGCAT CCCTATCCCT TCAACGTCTT CAGCCACAAT
TCCAATGTGG ACCCCGAAAC GGGCTACAAC GAGGAAGAGC TGAAGATGGT GAAGGAGACG
AAAAAGATTT TCGGCGACGA CAACATCCGC GTGACGGCGA CCTGTGTGCG CGTGCCGGTT
TTGCGCGCAC ATTCCGAAGC GCTCGATTTC GAGTGCGAAA ACCCGATCAC GCCGAAGGAA
GTGCGCGACA TTCTCGCGAA GGCGCCGGGT GTGAAGATCG TCGACGATGT GAGCGCGAAT
TATTTCCCGA TGCCGAAAGA CGCTTCCGGC AAGGACGACA TTCTCGTTGG CCGCATAAGG
CAGGATATTT CCGACCCCTC GGGCCGGTCG ATCGCGATGT TCGTCGCGGG CGACCAGTTG
CTCAAGGGTG CGGCGCTCAA CGCGGTGCAG ATCGGCGAGT TGCTGGTTCG CTGA
 
Protein sequence
MNPNPVVAIA GATGAVGVEM IRCLEERNFP VKELKLLASA RSAGKTMKFR GKDIVVEELT 
EASFKGVDIA FFSAGGGISR KFAQAVKEAG AVMIDNSSAY RMDPNVPLVI PEINPEAALH
HNGIIANPNC STIIAITPLW PIHKVNRVKR LVAATYQAAS GAGAAAMEEL EQATRAFLSG
EPFEQKIIPH PYPFNVFSHN SNVDPETGYN EEELKMVKET KKIFGDDNIR VTATCVRVPV
LRAHSEALDF ECENPITPKE VRDILAKAPG VKIVDDVSAN YFPMPKDASG KDDILVGRIR
QDISDPSGRS IAMFVAGDQL LKGAALNAVQ IGELLVR