| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3491 |
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| Symbol | |
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| ID | 5454643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3736255 |
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| End bp | 3739155 |
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| Gene Length | 2901 bp |
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| Protein Length | 966 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640879076 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001414747 |
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| Protein GI | 154253923 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.691252 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAGCG GAGAAACGCC GTTCCTTCTG GCGGGCAGCG AAGCAAGCGA CATCATCGCC
TCGTTCGATT GGGCAGCGAC GCCTCTCGGG CCGATGTCAT CCTGGCCGAG CAGCCTCAAA
GCCACGATTG GCCTTATCCT GCGATCGCCC GTTCCCATCG TCACGCTGTG GGGCGGAGAC
GGCATCATGA TCTACAATGA TGCCTATTCG ATTTTCGCGG GCGGGCGGCA TCCCGGCATT
TTCGGCTCGA AGGTCCGCGA CGGCTGGCCC GAGGTCGCTG ACTTCAACGA CAATGTGATG
AAGGTCGGCC TTGCGGGCGG AACGCTCGCC TATCGCGACC AGGAGTTGAC GCTTTACCGG
AATGGCGAAC CGGAACAAGT GTGGATGAAC CTCGACTATT CGCCTCTTCC CGACGAGACC
GGCAAGCCGG TGGGCGTGAT CGCCATTGTG GTCGAAACGA CGCGGCGCGT GGAAGCGGAG
AGACAGCTCG AGCGGGGCTT CGAAACGCTG CGGCGGATGT TCGAGCAGGC GCCGGGCTTC
GTTGCGATCC TGGCGGGGCC AGAACACACC TTCGTCATGG TCAACAACGC CTATATGCAG
CTTATCGGCC ATCGCGACAC GCTGGGAAAA CCCATTCGCG AGGCGCTGCC GGAAATCGTG
GATCAGGGCT TCGCCTCGCT TCTCGACCGC GTGCGCGACA CCCAGCAACC CTATATCGGA
CGCGGCATTC GCGTGTTGCT GCAGCGCGAA CCGGGAATGG CGCCGGAAGA ACGCTATCTC
GATTTCGTCT TCCATCCGGT AGCAGCCGCC CGCAGCGACG TGCGCGGCAT TTTCGTGCAG
GGGCACGACG TGACCGAGCG GCGGCTTGCC GAGATCGCGC TGCGGGAAAG CGAAGAGCGG
TTCCGCCTCG TTGCCGAAAG CGCGCCGGTG ATGCTGTGGA TGGGCGACGA GACCGGCAAG
TGCATCTATC TGAACGATGC GCTGCGCCGG TTCTGGAATG TGACGGCCGA GGGCGTGGCC
GATTTCAACT GGGCGACGAC GGTTCATCCC GACGACAGCG ATACGCTCCA CGGCCCATTC
AGTGCCGCCA TGGAAGCGCA CACCGCGTTC TCCGTGGAAG TGCGGTTTCG CCGCGCCGAT
GGCGAATACC GGATCATCAG GACGAATGCA CAGCCGCGCT TTGGGCCTGA CGGGAAGTTT
TCCGGCATGA TCGGCGTGAA TGTCGACGTG ACCGAGATGA GGCGAGCGGA AGAGGCGCTG
CACGCCGCCA ATGCGAACCT GGAGCAACGC GTGGCACGGG AAGTGGCCGA ACGCTCGAAG
GCCGAAGACG CCTTGTGGCA GGCGCAGAAG ATGGAAGCCA TCGGCAAGCT GACCGGCGGC
GTCGCGCATG ACTTCAACAA CCTGCTGCAG GTCGTCTCCG GCAATCTGCA ATTGCTGCTG
AAGGACCTGG ACGGAAACGA ACGGGCGCAG CGGCGGATAA CAAACGCGCT TGCCGGTGTC
GACCGCGGCT CCAAGCTTGC GAGCCAGCTT CTCGCTTTCG GGCGGCGGCA ACCGCTGGAA
CCGAAGGTCG TCAACATCGG GCGGCTGGTT TCAGGCATGG GCGACATGCT GCGGCGAACC
ATCGGTGAAA ATGTCGAAGT TGAAACCGTG GTGTCGGGCG GGCTGTGGAA TACATTCGCG
GACCCTGCGC AGCTCGAGAA TGCACTGCTC AATCTGGCCA TCAACGCGCG CGACGCGATG
AACGAGCAGG GACGCATGAC GATCGAGGTG GGGAACGCCT ATCTCGACGA TGTCTATGCG
CTCGATCATC CGGAAATTGC GCCCGGCCAA TATGTGGTTC TGGCAGTGAC AGATACGGGC
TGTGGCATTC CGGCGGATGT GTTGCCGCAG GTATTCGAGC CGTTCTTCTC GACCAAGCCA
CAGGAGAAGG GCACGGGTCT CGGGCTTTCG ATGGTCTATG GCTTCGTCAA ACAATCGGGC
GGGCACATCA AGATTTACAG TGAGGTCGGA CACGGGACGA CCGTGAAGCT CTACCTGCCG
CGCGTGAACG AGATGGAAGA CATAAGCGCG CTGCCGGGGG TTGGCGTTCC AACCGGCGGA
ACGGAGACCA TTCTGGTGGC GGAGGACGAC GAGGCCGTGC GCACGGTCGT GGTCGAGATG
CTGAACGATC TCGGGTATCG GGTGCTGACG GCGCGGGACG CGGCGAGCGC GCTGACCGTG
CTGGAAAGCG GGGTGCCGGT GGACCTGCTC TTTACCGACG TGGTGATGCC GGGACCGCTC
AAGAGCACCG ACCTTGCGAG GAAGGCGCGC GAAAGGCTGC CCAGTATCGG CGTGCTCTTC
ACATCGGGCT ATACCGAAAA TTCGATCGTG CATGGCGGAC GGCTCGATCC CGGCGTCGAC
CTTCTGTCGA AGCCCTATAC GCGGGAGGCG CTGGCGCGGA AGCTGCGCCA GGTCCTGGAC
GGCAAGGAGC CGAAGAAGGC GACAGTGACA ATGGCGACGT CGTCCGCCGC GAATGCGCAG
GAAGCGGGAG CAACGCCCGC TGCGGGTCTG ACGATACTGC TATGCGAGGA CGATGCGCTG
ATCCGCATGA GCACAGCGGA CATGCTGCGC GAAGTGGGGC TGATCGTTAT CGAGACGGAT
ACGGCGCAAG AGGCGCTCGA CATAATCGAG AATGGTGCGG TCGACCTTCT TATCACCGAT
GTGGGACTGC CGGATATGTC GGGCGTGGAA CTTGCGCTGG CGTTGCGGAA ATCCAGGCGG
GACATACCGG TAATCTTCGC GACCGGCCAT GCGGAACTCG ACGGCGCTGA CGGCATATTG
CGCAGTGCGG TTGTATCGAA GCCTTATGCG GTGATCGAAC TGAAGCGGTG CATCGACCAG
CTGATGGCGC TCGGCGCCTA G
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| Protein sequence | MQSGETPFLL AGSEASDIIA SFDWAATPLG PMSSWPSSLK ATIGLILRSP VPIVTLWGGD
GIMIYNDAYS IFAGGRHPGI FGSKVRDGWP EVADFNDNVM KVGLAGGTLA YRDQELTLYR
NGEPEQVWMN LDYSPLPDET GKPVGVIAIV VETTRRVEAE RQLERGFETL RRMFEQAPGF
VAILAGPEHT FVMVNNAYMQ LIGHRDTLGK PIREALPEIV DQGFASLLDR VRDTQQPYIG
RGIRVLLQRE PGMAPEERYL DFVFHPVAAA RSDVRGIFVQ GHDVTERRLA EIALRESEER
FRLVAESAPV MLWMGDETGK CIYLNDALRR FWNVTAEGVA DFNWATTVHP DDSDTLHGPF
SAAMEAHTAF SVEVRFRRAD GEYRIIRTNA QPRFGPDGKF SGMIGVNVDV TEMRRAEEAL
HAANANLEQR VAREVAERSK AEDALWQAQK MEAIGKLTGG VAHDFNNLLQ VVSGNLQLLL
KDLDGNERAQ RRITNALAGV DRGSKLASQL LAFGRRQPLE PKVVNIGRLV SGMGDMLRRT
IGENVEVETV VSGGLWNTFA DPAQLENALL NLAINARDAM NEQGRMTIEV GNAYLDDVYA
LDHPEIAPGQ YVVLAVTDTG CGIPADVLPQ VFEPFFSTKP QEKGTGLGLS MVYGFVKQSG
GHIKIYSEVG HGTTVKLYLP RVNEMEDISA LPGVGVPTGG TETILVAEDD EAVRTVVVEM
LNDLGYRVLT ARDAASALTV LESGVPVDLL FTDVVMPGPL KSTDLARKAR ERLPSIGVLF
TSGYTENSIV HGGRLDPGVD LLSKPYTREA LARKLRQVLD GKEPKKATVT MATSSAANAQ
EAGATPAAGL TILLCEDDAL IRMSTADMLR EVGLIVIETD TAQEALDIIE NGAVDLLITD
VGLPDMSGVE LALALRKSRR DIPVIFATGH AELDGADGIL RSAVVSKPYA VIELKRCIDQ
LMALGA
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