| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3483 |
|---|
| Symbol | |
|---|
| ID | 5455478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3729236 |
|---|
| End bp | 3730009 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640879068 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001414739 |
|---|
| Protein GI | 154253915 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
|---|
| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATTTTT TCGCGGTTAT CGGGCGGGTC GTGCTGGCGC TGCTTGGCGA GATCGGACGG
CTGTCGCTAT TCGTCTGGCT GTCGGTTTCC CACATCCTGC GGCCGCCCTT CTTCTGGCGG
CTGACGGCGC AGCAGATGCT GCGGATCGGC TATTTCTCGC TGCCGGTGGT GGCGCTCACC
GCCTTCTTCA CGGGTGGCGC GCTGGCGCTG CAAATCTATT ACGGCGGCAA CTCGTTCAAT
TCGGAATCGA TCGTCGCGAC CATCGTCGCG CTCGGCATCA CACGCGAACT GGGGCCGGTG
CTTGGCGGCC TGATGGTGGC GGGGCGCGTT TCGGCGGCGA TCGCGGCGGA ACTCGGCACG
ATGCGCGTGA CAGAGCAGAT CGACGCGCTG ACGACGCTTT CGACCAACCC GCATAAATAT
CTGGTGGTGC CGCGCGTGGT GGCAGCCGTC ATCACGCTGC CGCTGCTGGT GCTCGTTGCC
GACATCATCG GCATCATGGG CGGCTATGTG GTGGGCACGG CGTCGCTCGA TTTCAACGGC
GGCGTCTATA TCAAGAATAC GGCGGACTTC CTGAAGCTCG ACGATGTGAC GTCCGGCCTC
ATCAAGGCGG CGGTGTTCGG CTTCATCATC GCCGTCATGG GCTGCTTCCA CGGCTTCAAC
TCGAAGGGTG GCGCGCAGGG CGTGGGCCGC GCGACGACGA ACGCGGTGGT GACGGCCTCC
ATTCTGATCC TTGCGGCGAA CTACGTCATG ACGTCGCTGC TGTTTGCGAG CTGA
|
|---|
| Protein sequence | MNFFAVIGRV VLALLGEIGR LSLFVWLSVS HILRPPFFWR LTAQQMLRIG YFSLPVVALT
AFFTGGALAL QIYYGGNSFN SESIVATIVA LGITRELGPV LGGLMVAGRV SAAIAAELGT
MRVTEQIDAL TTLSTNPHKY LVVPRVVAAV ITLPLLVLVA DIIGIMGGYV VGTASLDFNG
GVYIKNTADF LKLDDVTSGL IKAAVFGFII AVMGCFHGFN SKGGAQGVGR ATTNAVVTAS
ILILAANYVM TSLLFAS
|
|---|
| |