| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3454 |
|---|
| Symbol | |
|---|
| ID | 5456026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3695415 |
|---|
| End bp | 3696620 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640879040 |
|---|
| Product | sodium/glutamate symporter |
|---|
| Protein accession | YP_001414711 |
|---|
| Protein GI | 154253887 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0786] Na+/glutamate symporter |
|---|
| TIGRFAM ID | [TIGR00210] sodium--glutamate symport carrier (gltS) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.890755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.830149 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG ATGCCTTCCA TGGATTCACG CTCGCCATCG TGCTGTTGTT CGTGGGCAAG
GGCCTGGTTG CGCGTTGGGG CATCTTGCGT CGATACAGCA TCCCGGAATC CCTGGTGGGC
GGCCTGGCCT GCGCCCTGGT TGTCTTCGCC CTGTACTACG GTGCGGGGAT CGTCGTCAGT
TTCGATCTCG AAGCGCGTGA CGCGCTGCTG CTGTACTTCT TTGCGGCCAT TGGCCTGAGT
ACCGACGCCC GCACGCTGCG CCATGGTGGG CGGCCCTTGC TGATCCTGTC GGGGTTGGCC
ATCGGGTTCA TGGTGCTGCA GAACCTGGCC GGGATGGAGA TGGCACGCGC CTTCGGCCTG
GATCCGCGCG CCGGGCTGAT GGTGGGATCG ATTTCCCTGA CCGGAGGCGT GGGCACCACC
TTGGCCTGGT CCGATCACTT CGTTCAAAAC CTCGGCATTG CGCAAGCGCA GGAACTGGGA
TTGGCAGCGA ACATGATCGG CCTGATCGCG GCCTGCACCA TCGGTGGCCC GATCGCAAGC
CTACTCATGC GCAGATATCA ACTTCGAGCC TCCGGGGACA GCACACTGGA GATTGGCACG
CTGCACAGCG ATGAACAGCA TGCCCGTCTG GACTACTACG GTGTGCTATT GGCATTGCTC
TGGCTCAACT TAGCCTTGAT GTTGGGCTCC GGAGTCAATG CCTTGGTCGC GCTTACCCCT
GTCACGCTAC CCGCCTTTGT GGGCTGCCTG CTGGCCGGCA TTCTCCTGCG CATGATTGGC
GACTGGATGA GGCCGAGTGG GCGCGGGCGT CTATGGAACT GGCCGAGCAT GCAGCCGGGC
ATCGCTTTGA TCTCCGACAT GTCATTGGGC CTGTTTCTGA CCATGGCGCT GATGGGCCTC
AGACTCTGGG AGCTGCAGCC TGTGCTTGCC TTCATCACCG TGGCAATGCT GGTGCAGATC
ATCCTGGTCA TCGCATTCGT GCTTCTGATC GTTTTTCGGG CAATGGGCAG GGATTACCAA
GCCGCAGTGA TGTGCGCCGG TTTCGGCGGA ATCGCGCTGG GCTCTACCGC CACCGCCATC
GCCAACATGA CGGCGATCAC TCGGGAGCAT GGCGCTGCGC GCGAGGCGTT CATTGTGGTG
CCCCTGGTGT GCGGGTTCGT CATCGACATT GCGAACGCGC TGGTGATCAG CCTGATGGCC
GGTTAA
|
|---|
| Protein sequence | MKIDAFHGFT LAIVLLFVGK GLVARWGILR RYSIPESLVG GLACALVVFA LYYGAGIVVS
FDLEARDALL LYFFAAIGLS TDARTLRHGG RPLLILSGLA IGFMVLQNLA GMEMARAFGL
DPRAGLMVGS ISLTGGVGTT LAWSDHFVQN LGIAQAQELG LAANMIGLIA ACTIGGPIAS
LLMRRYQLRA SGDSTLEIGT LHSDEQHARL DYYGVLLALL WLNLALMLGS GVNALVALTP
VTLPAFVGCL LAGILLRMIG DWMRPSGRGR LWNWPSMQPG IALISDMSLG LFLTMALMGL
RLWELQPVLA FITVAMLVQI ILVIAFVLLI VFRAMGRDYQ AAVMCAGFGG IALGSTATAI
ANMTAITREH GAAREAFIVV PLVCGFVIDI ANALVISLMA G
|
|---|
| |