| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3452 |
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| Symbol | |
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| ID | 5456103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3693348 |
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| End bp | 3694100 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640879038 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001414709 |
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| Protein GI | 154253885 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.759326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTACT CATTTTCTGG CCGCGTAGCC CTGGTCACCG GTGCAGGATC CGGCATTGGC
GAGGCCATCG CGCGACTTCT TGCGAGTAAC GGCGTGAGTG TCGTCGTCTC GGATGTCAGC
GCCGACAATG CGCAGCGCGT CGCCAAGCTC ATCAGCGCCG ATGGCGGCCA AGCCGTGGCC
AATGTGGCCG ACGTGGCACG CATCGATGAG GTCCAGGCTG CCGTGGCCTG CGCGGTCGAT
ACGTTCGGCG ACCTTCATTT TGCCGTCAAC AACGCCGGTA TCGGTGGCGA CCAGAGCCCG
GCGGGAGAAC TGGACCCTGC CGCCTGGCGC CGGGTGATCG ATGTCAACCT GAACGGCGTG
TTCTATGGCC TGCGCCATCA GATTCCCGCC ATCCTGCGCT CGGGAGGCGG CGCCATCGTC
AACGTCTCCT CCATCCTGGG GGTGGTGGGC GACGCAGCGA ACCCTGCGTA CGTCGCAGCC
AAACATGGCG TGACCGGGCT GACCCGCTCG GCAGGACTGG CCTATGCGTC CAAGGGAATC
CGGATCAATT CGATTCATCC CGGTTACGTG CGTACGCCCA TCCTGGATTT CCTGGATGAA
TCGGCCCTCC AGAAGGCCGT TGACCTGCAT CCGATCGGTC GTCTGGGTAC ATCGGACGAA
ATCGCCCATG CCGTGGCGTT TTTGCTGTCG GAAGGAAGCA GCTTCCTTGT GGGCACCCAG
CTCATCGCCG ATGGCGGCTA CACGGCGCGC TGA
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| Protein sequence | MKYSFSGRVA LVTGAGSGIG EAIARLLASN GVSVVVSDVS ADNAQRVAKL ISADGGQAVA
NVADVARIDE VQAAVACAVD TFGDLHFAVN NAGIGGDQSP AGELDPAAWR RVIDVNLNGV
FYGLRHQIPA ILRSGGGAIV NVSSILGVVG DAANPAYVAA KHGVTGLTRS AGLAYASKGI
RINSIHPGYV RTPILDFLDE SALQKAVDLH PIGRLGTSDE IAHAVAFLLS EGSSFLVGTQ
LIADGGYTAR
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