| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3445 |
|---|
| Symbol | |
|---|
| ID | 5456150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3683068 |
|---|
| End bp | 3684147 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640879031 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001414702 |
|---|
| Protein GI | 154253878 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.858033 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTCT CACCCTCTCT CAAGAAAAAA CTCCTGGTCG CTGCCGCCGC AGCGGTTGTT
GTCGCGCTGG CCTGGTGGGG CTGGACGAAA TTTGCCGACA CCGGCCCCGG CGAAGGATTC
GTCAACGGCA ATGGCCGCAT CGAAGCCACC GAGATCGACA TCGCCACCAA GCTTCCCGGA
CGTATCGAAG ACATCCTTGT ACGTGAAGGC GATTTCGTCG CAGCGGGCCA GCCGCTGGCC
AGGATGCAAC TGGAAACGCT TGAGGCGCAG CGCGACGAAG CCTTCGCCAT GCGTGAACAG
GCCGAGCATT CTGTGACCGC AGCACAGGCC CAGGTGGCGC TGCGTGAAGC CGACGTGGTT
GCGGCGCAGG CACTCGTCGG TCAGCGCGAG TCGGAGCTCG ATGCCGCGCA ACGGCGGCTG
AAACGTTCGC AGACATTGTC CCAAGAAGGC GCCGCCTCGA TACAAGAATT GGACGATGAC
CGGGCGCGCG TGCGGGGCGC ACAGGCGACG CTCGCGGCCA GCAAAGCACA GACCGCCGCT
GCCCGCGCCG CGGTCGAGGC CGCCAAAGCG CAGTTGGTCG GCGCAAGGTC CAGCGTGTCC
GCTGCCACGG CCAGTATCAA TCGCATCGAA GCCGATATCC GCGACAGCGA ACTGCGCTCG
CCGCGTGACG GTCGGGTGCA GGTGCGCGTG GCGCAACCCG GCGAGGTGCT GGGTTCGGGC
GGACGTGTCT TGAACCTGAT CGACCTGTCG GACGTATACC TCACCTTCTT CTTGCCCGAG
ACCGTGGCCG GGCGTGTCGG GCTCGGCTCC GAGGTACGCA TCGTTCTGGA TGCCGCGCCG
GAGTACGTGA TACCAGCCAC CGTTTCCTTC GTCGCCAGCG CGGCGCAGTT CACCCCCAAA
ACGGTGGAAA CCGCCAGCGA ACGGCAGAAA CTGATGTTTC GCGTGCGTGC GCAGATTTCG
CAGGAGTTGC TGCGTGAGCA CCTCAATCAG GTCAAGACCG GGTTGCCTGG CGTGGCCTGG
ATCAAACTCG ACGCCAATGC CGAGTGGCCT CAAAACCTCT CCGTTCGCGT GCCGGAGTAA
|
|---|
| Protein sequence | MTFSPSLKKK LLVAAAAAVV VALAWWGWTK FADTGPGEGF VNGNGRIEAT EIDIATKLPG
RIEDILVREG DFVAAGQPLA RMQLETLEAQ RDEAFAMREQ AEHSVTAAQA QVALREADVV
AAQALVGQRE SELDAAQRRL KRSQTLSQEG AASIQELDDD RARVRGAQAT LAASKAQTAA
ARAAVEAAKA QLVGARSSVS AATASINRIE ADIRDSELRS PRDGRVQVRV AQPGEVLGSG
GRVLNLIDLS DVYLTFFLPE TVAGRVGLGS EVRIVLDAAP EYVIPATVSF VASAAQFTPK
TVETASERQK LMFRVRAQIS QELLREHLNQ VKTGLPGVAW IKLDANAEWP QNLSVRVPE
|
|---|
| |