| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3444 |
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| Symbol | |
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| ID | 5456075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3681566 |
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| End bp | 3683053 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640879030 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001414701 |
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| Protein GI | 154253877 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.960604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCCAG CTTCCCTGTT GTTTCCTGCG TTCAGCTTGC GCACTGCCTC GTTGGCCCTG
AGCGCCGTCG TCTTGACCGG CTGCATGTCG CTCGCTCCGG CGCCAGACAC CCCGCCGCTG
CCCGTGCCCG AAGCCTGGCC TGCGCATCTT GGATCAGGCA CCGACGGCGC CCACGCGGGA
GAGCTTGCCT GGCAGGCGTA CTTCACCGAC CCCCTGCTGC AACGCCTCAT CGAGACCGCG
CTGGAGAACA ACCGCGACCT GCGCTTGGCC GCGCTGCGCG TCGAGGAAGC CAGCGCCACA
TTCCGCATTC AGCGCTCGGA TCGTTTTCCT GCCGTGGGCG TGGGCGCCCA AGGTGGACGC
GCGCGCGTCC CTGGCGATCT GAACATGTCG GGCCGATCGC AGGTGGGCGG CGAATATCGG
GCCGAGGTGG GTTTGAGCAC CTGGGAGCTG GATCTGTGGG GCCGGGTCCG CAACCTGGAA
GACGCCGCCC TGCAAAGCTG GCTGGCTTCC GACGCGGCCC GCCAGGCCGT CCACCTGGCG
CTGATCGCCC AGGTGGCCGA CGGTTATCTT GGCTTGCGCG AGATAGACGA ACGCGTGGCT
ATCGCCCGTC AAACCGTCGC GACCCGCGAG GAGTCCTATC GCATTTTCCG GCGCCGCGTT
GAAGTCGGCT CGACCTCGAA GCTGGACCTC ACTCAAGTCC AAACTTTGCT GAACCAGGCT
CAGGCGCTGC TAACCCAGCT TGAGCAAGCC CGCGCCACGC AACGGCATGC GCTGGCGATG
CTGGTGGGCG CCGATCCTGG CCCGCTGCCC ACCAAGGTGC CCTTCGATGA AACGACGGTG
CTGGCTGAGC TGCGGGCCGG TCTGCCTTCG GAGCTGCTGG TCAGTCGCCC GGACATCATT
GCCGCCGAAC ACCAATTGCG TGCCAGCGAT GCCCACATCG GCGCGGCCCG CGCGGCGTTC
TTGCCGCGCA TTGCGCTGAC TGGCAGCTTC GGCACGGCCA GCTCCGACTT GAATGGCTTG
TTCGATTCCG GCAGTCGCGC CTGGACCTTC ATGCCCACCC TGTCACTGCC CATCTTCGAT
GGCGGGCGCC GACGCGCCAA TCTGGAACTG AGCGAAGTGC GCCGCGACAT CGCCGTCGCC
GGTTACGAAA AAACCATTCA AACAGCCTTC CGCGAGGTGG CCGATGCGCT GAGCGCAAAG
CACTGGCTGG CTGAGCAGTT GACGATCCAG AGAGCCAACC TGGAAGCGCA AAGCGAACGC
GCACGGCTGG CCCAGTTGCG CTACGACAAC GGCTCGGCCG CCTTCCTGGA GGTGCTGGAT
GCCCAACGCG ATCTGCTGGG TGCCCAGCAA CAACTGGTAC AGGCGCGCCG CGCGCTGCTG
TCCAGCCAGG TGGCGCTGTA TGCCGCGCTC GGCGGCGGCA CCCTCGCTGC AACCGACGGG
GCGCAGGGTG CGACCTCGAC GCCCGCTCCC ACCCCATCAA TCCGTTAA
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| Protein sequence | MPPASLLFPA FSLRTASLAL SAVVLTGCMS LAPAPDTPPL PVPEAWPAHL GSGTDGAHAG
ELAWQAYFTD PLLQRLIETA LENNRDLRLA ALRVEEASAT FRIQRSDRFP AVGVGAQGGR
ARVPGDLNMS GRSQVGGEYR AEVGLSTWEL DLWGRVRNLE DAALQSWLAS DAARQAVHLA
LIAQVADGYL GLREIDERVA IARQTVATRE ESYRIFRRRV EVGSTSKLDL TQVQTLLNQA
QALLTQLEQA RATQRHALAM LVGADPGPLP TKVPFDETTV LAELRAGLPS ELLVSRPDII
AAEHQLRASD AHIGAARAAF LPRIALTGSF GTASSDLNGL FDSGSRAWTF MPTLSLPIFD
GGRRRANLEL SEVRRDIAVA GYEKTIQTAF REVADALSAK HWLAEQLTIQ RANLEAQSER
ARLAQLRYDN GSAAFLEVLD AQRDLLGAQQ QLVQARRALL SSQVALYAAL GGGTLAATDG
AQGATSTPAP TPSIR
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