| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3424 |
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| Symbol | |
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| ID | 5455758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3659912 |
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| End bp | 3662782 |
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| Gene Length | 2871 bp |
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| Protein Length | 956 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640879013 |
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| Product | hypothetical protein |
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| Protein accession | YP_001414684 |
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| Protein GI | 154253860 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.38542 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTGGA AACTCTCTTG GCCGAAGCTG GCCGCATCCA GTGCTGGCGA TGAAGAGCAA
CCGGACGGCT GGAAGCGCCA TGTTGAGGCC TTGCGCCAGG CCGGTATTCC CGAACCCGGC
TCGGCGGTCC GCGGGCGCAG GTCGGCAACG GTGGCCGACG AGCAGGCGCT GTACGACGTC
GCGCCTTCGT TCGTGGAACT GCTGCCTTGG GTGGAGTTCC TGCCCGAGTC GAAGGCCATG
CTGCTGGAGG ACGGGCAATC GGTCGCGGCC TTCTACGAGT TGGTGCCGCT GGGCACCGAG
GGCCGGGAAC CCGGCTGGCT CGCACATGCC CGGGATGCCC TGGAGAATGC GCTGCAAGAC
AGCTTCGATG AATTGGACGA GCACCCCTGG GTACTCCAGC TCTACGCCCA GGACGAGGCC
AGCTTCGACC AGTACATGCA GACCCTGCGC GACTACGTGC AGCCGCGCGC ACGCGATACA
GCTTTCACCG AGTTCTACCT GCGCTTTTTC GGTCATCACC TGCGCGCGGT GGCCAAGCCG
GGTGGCCTGT TCGAGGACAC CGTGGTCACG CGCCTGCGCT GGCGCGGCCA AAGCCGGCGT
GTACGGATGG TGGTCTATCG GCGTTCCAGC GGACAGGCGA GCCGCCGTGG CCAGACGCCG
GAGCAGATGC TCAATATCGT CTGCGATCGC CTGTGTGGTG GCTTGGCCAA CGCCGGTATT
CAGGCCCGGC GTATGGTCGC AACCGACGTT CACGACTGGC TGCTGCGGTG GTTCAACCCC
AATCCCGCGT TGCTCGGGCC TGCGGTCGAG GACCGCGAGC GCTTCTATGC GTTGGCACGC
TATCCCGATG AGACCGAAGA CGGCGAGATC GAACTGGCGA GCGGACGGGA TTTCAGCCAA
CGGTTGTTCT TTGGGCAACC GCGCTCCGAC GTAGCGCGCG GTACCTGGAC CTTCGACGGC
ATGCCGCACC GCGTGCTGAT CACCGACCGG CTACGGATGC CACCCGGCGC CGGGCATCTG
ACCGGAGAGA CCCGCAAGGG CGATGCGATC AACACGCTGT TCGACCAGAT GCCCGAAGAC
ACCTTGATGT GCCTGACGAT GGTCGCCACA CCGCAGGATG TCCTCGAATC GGATTTGAAT
CACCTGGCGA AGAAGGCCGT GGGCGAAACC CTGGCATCCG AGCAGACGCT CAAGGATGTG
CACGAGGCCC GTTCGCTCAT CGGCAGCGCG CACAAGCTCT ACCGGGGCAC GCTGGCGTTC
TACCTGCGCG GGCGTGACGA AGCCGAGCTG AACCGTCGCG GGCTGGATCT GGCGAACGTG
ATGCTCAACG CCGGCTTGCA GCCGGTGCGC GAGGACGACG AGGTGGCGCC GCTCAACAGC
TACCTGCGCT GGCTGCCGTG CTGCTACAAC CCCAGCCAAG ACCGGCGCAA GTGGTACACG
CAACTCATGT TCGCCCAGCA CGCGGCGAAT CTGTCGCCGG TATGGGGCCG TGCTCAGGGC
ACCGGGCACC CCGGCATCAC GATGTTCAAC CGCGGCGGCG GCCCGATCAC TTTCGACCCG
CTCAACCGCC TGGACCGACA GATGAATGCC CATCTGTTCC TGTTCGGCCC AACCGGCTCG
GGCAAAAGCG CCACGCTCAA CAACCTGCTG AACCAGGTCA CGGCCATCTA CCGGCCGCGG
CTCTTCATCG TGGAGGCTGG CAACAGCTTC GGTTTGTTCA GCGAATTTGC CAGGCGTTTG
GGTCTGACGG TCAACCGCGT GAAGCTGGCC CCTGGCTCGG GCGTGACCCT GGCGCCGTTT
GCCGATGCGC GCCGGCTGAT CGAGACACCC AGCGACGTGC AAACGCTCGA TGCCGATGCG
CTGGACGAAG AGCTGCCACC CGATGCCTCG GCCATGGAGC CGGACGAGCA ACGCGACGTA
CTGGGCGAGT TGGAGATCAC CGCGCGGTTG ATGATCACAG GTGGGGAAGA CAAGGAAGAA
GCCCGCATGA CGCGGGCCGA CCGCTCGCTG ATCCGCCAGT GCATTCTGGA TGCTGCCGAG
CGCTGCGTGG CCAAGAGGCG CACGGTGCTC ACGCGTGATG TGCGTGATGC GTTGCGCGCG
CGGGGCAACG ACAGCACGCT GCCAGAGATG CGGCGCGTGC GGCTGCTGGA GATGGCGGAC
GCAATGGACA TGTTCTGCCA GGGCACGGAT GGCGAGATGT TCGATCGGGA CGGTTCCCCT
TGGCCCGAGG CCGACATCAC TCTGGTGGAT CTCGCGACCT ATGCTCGCGA GGGCTACAAC
GCGCAGCTCT CCATCGCGTA CATCAGCCTG ATCAGCACGG TGAACAACAT CGCCGAGCGC
GACCAGTATC TGGGCCGACC GATCGTCAAT GTGACCGACG AAGGCCACAT CATCACCAAG
AACCCGTTGC TCGCGCCCTA CGTCGTGAAG ATCACGAAGA TGTGGCGCAA GTTGGGCGCG
TGGTTCTGGC TCGCGACGCA GAACATTGAC GATCTGCCCC GTGCCGCAGA ACCCATGCTC
AACATGATCG AGTGGTGGAT CTGCCTGTCG ATGCCGCCGG ACGAGGTGGA GAAGATCGCG
CGCTTTCGCG AACTCTCGCC CGCGCAGAAG GCGTTGATGC TTTCCGCACG CAAGGAAGCA
GGGAAATTCA CCGAAGGCGT GATCCTGTCG AAGTCGATGG AGGTGCTGTT TCGGGCCGTA
CCGCCAAGCC TCTACCTCGC ACTCGCGCAG ACCGAACCCG AGGAGAAGGC CGAACGCTAC
CAGCTCATGC AGCAGTACGG CATCACCGAA CTGGAGGCGG CCTTCAAGGT GGCCGAGAAC
ATCGACCAGG CACGCGGCAT CGAGTCGCCG GCCCTGGACC TGCCGCAATA G
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| Protein sequence | MRWKLSWPKL AASSAGDEEQ PDGWKRHVEA LRQAGIPEPG SAVRGRRSAT VADEQALYDV
APSFVELLPW VEFLPESKAM LLEDGQSVAA FYELVPLGTE GREPGWLAHA RDALENALQD
SFDELDEHPW VLQLYAQDEA SFDQYMQTLR DYVQPRARDT AFTEFYLRFF GHHLRAVAKP
GGLFEDTVVT RLRWRGQSRR VRMVVYRRSS GQASRRGQTP EQMLNIVCDR LCGGLANAGI
QARRMVATDV HDWLLRWFNP NPALLGPAVE DRERFYALAR YPDETEDGEI ELASGRDFSQ
RLFFGQPRSD VARGTWTFDG MPHRVLITDR LRMPPGAGHL TGETRKGDAI NTLFDQMPED
TLMCLTMVAT PQDVLESDLN HLAKKAVGET LASEQTLKDV HEARSLIGSA HKLYRGTLAF
YLRGRDEAEL NRRGLDLANV MLNAGLQPVR EDDEVAPLNS YLRWLPCCYN PSQDRRKWYT
QLMFAQHAAN LSPVWGRAQG TGHPGITMFN RGGGPITFDP LNRLDRQMNA HLFLFGPTGS
GKSATLNNLL NQVTAIYRPR LFIVEAGNSF GLFSEFARRL GLTVNRVKLA PGSGVTLAPF
ADARRLIETP SDVQTLDADA LDEELPPDAS AMEPDEQRDV LGELEITARL MITGGEDKEE
ARMTRADRSL IRQCILDAAE RCVAKRRTVL TRDVRDALRA RGNDSTLPEM RRVRLLEMAD
AMDMFCQGTD GEMFDRDGSP WPEADITLVD LATYAREGYN AQLSIAYISL ISTVNNIAER
DQYLGRPIVN VTDEGHIITK NPLLAPYVVK ITKMWRKLGA WFWLATQNID DLPRAAEPML
NMIEWWICLS MPPDEVEKIA RFRELSPAQK ALMLSARKEA GKFTEGVILS KSMEVLFRAV
PPSLYLALAQ TEPEEKAERY QLMQQYGITE LEAAFKVAEN IDQARGIESP ALDLPQ
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