Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3390 |
Symbol | |
ID | 5455580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3628898 |
End bp | 3631852 |
Gene Length | 2955 bp |
Protein Length | 984 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640878979 |
Product | heavy metal translocating P-type ATPase |
Protein accession | YP_001414650 |
Protein GI | 154253826 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG2217] Cation transport ATPase |
TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC [TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase [TIGR01525] heavy metal translocating P-type ATPase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 0.0773629 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATGGCAT CCGGGGAAAA CCTTGTCAAT GAAGAGCGAT CTATGAACAA AGAACCTTCC AGCCCATGCG CCTGCTCCGG CGGCAATGGC CAACAGACGG CGTGCGCCAG TGAGCAGGCC AGCACTGAAA CCACCGTTTT CCACGTGAGC AACATGGATT GCCGCAATGA GGAAGCACTG GTGCGGCGAA CGCTGGAGGG CATGCCCGGT GTCGAGCGGC TCCTGTTCGA TCTTCCGCAG CGTTTGTTGA CCATTTCGCA CCGCGAAGTC TCGGCCGATG CCTTGGAGCA AGCGCTGAAT TCGGTGGGCA TGAAGGCTCA GGCTGTCCGA GACGCCGCCG TGTCGACCAC CTACCGCATC GAGAACATGG ACTGCCCGAG CGAGGAGAAA CTCATCCGCT CGCACCTCGG GGCAGTCGAG GGAATTCAGG ACCTCGACTT CGACCTCGCT GAGCGCACCC TGTCGGTGAA ACACCTCGCT CAGGCACGCG CGCAGATGGA GCAGGTCCTG GCCTCGATCG GCATGCGCGC CAAGGAGCAG ACCTTCGGCC ACACGGGGCC GATCGAAGCC GCGGCTGTGA TCCCATCCTC GGCCCTGCAG CAGCAACCAA CCGCTGCCGT TTCCGCGCCG CCGATCGGCG AGCGGGTGAC GTACCGGATC GAGAACATGG ATTGCCCGAC GGAAGAAGCG CTGATCCGCG ACCGGCTGGG CAAGCTGCCG GGTGTGACCG CGCTCGACTT CAATCTGATG CAGCGTGTGC TGGGAGTCCA GCACACGCTG GCGACCTCAG CGCCGATCGA GAAGGCGCTT GCTTCCATTG GAATGCAGGC TGCGCGGCAG GACATGCAGA CAGCCACCAC GGTACTTCGC ATCGCGAAGA TGGACTGTCC GACCGAGGAA AGTCTGATCC GCGGCAAGCT GCAAGGCATG CCGGGCGTGC AGGGAATGGA TTTCAACCTG ATGCAGCGCA CGCTCACGGT TCGGCACACA CCCGACGCGA TCAAGCCGGC AGTCGAAGCC ATCGAATCGC TGGGCATGGA AGCCGAGGTC CAGAGGACTG ATGAGCCGCG CGATGCCCCG GTGGCCGCGC ACAAGACCAA TTGGTGGCCG ATGGCGGTTT CGGGCGTTGC GGCGGTGGCC GCCGAAGGCG TGTACTGGGT CAACGACGGC AATCATTGGG CCGTGATCGT GCTGGCACTG GTTTCGATCT TCACCGGCGG CCTCAGCACC TACAAGAAGG GCTGGATCGC GCTGAAGAAC CTCAACCTGA ACATGAACGC CCTGATGGCC ATCGCGGTCA CCGGCGGCAT GGCGATCGGC CACTGGCCGG AGGCCGCCAT GGTCATGTTC CTGTTCGCGT TGGCGGAAGT GATCGAGGCG AAGTCGCTGG ACCGCGCCCG CAACGCCATT CGGGGGCTGA TGGACTTGGC GCCCGAGACC GCGACCGTGC GGCAGGCCGA TGGCTCATGG ACAGAGCTGC CGGCCAAGGA GGTCGCAAAG GGCGCGGTGG TCCGCGTGCG TCCTGGCGAG CGCATCGCAC TGGACGGCCT GATCACCTCG GGTCGATCGG CCATCAACCA GGCGCCCATC ACCGGCGAGA GCCTGCCCGT CGAGAAGGCC GAAGGTGACC AGGTCTTCGC CGGAACCATC AATGAGACCG GCTCTTTCGA ATACAAGGTG ACCGCAGGCG CCAGCGACTC GACGCTCGCG CGCATCATCC ATGCCGTGGA GTCCGCGCAG GGCAGCCGTG CGCCCACGCA GCGCTTCGTC GACCAGTTCG CCCGCGTCTA CACGCCGGCG GTGTTCGCGG TGTCCGTGCT GGTTGCCGTC GTGCCGCCGC TCGCCTTCGG CGGCGCATGG TTTGACTGGG TCTACAAGGC CCTGGTACTG CTGGTGATCG CCTGCCCCTG CGCTCTGGTC ATCTCCACGC CGGTCACCAT CGTCAGCGGC TTGGCCGCTG CCGCCCGACG CGGCATCCTG ATCAAGGGTG GCGTCTACCT GGAGGGCGGG CGCAAGCTCA AGGCGTTGGC CCTGGACAAG ACCGGCACAC TCACACATGG CAAGCCCGAG CAGACCGACT TCGTGCCGCT GATCGGCGAG GCGCAGGAAG TTGCCGCCTG GGCCGCAAGC CTCGCGGCAC GCTCGGACCA TCCTGTGTCT CAGGCCATCG CCCGCAAGGC GAACCGTGAC GGCATCGCGC TGCACGAGGT CGACGACTTC GCGGCGCTGC CTGGCCGCGG CGTGCGCGGC CGCGTCGCCG GGCGCATGTT GCACATGGGC AACCACAGGC TCGCCCAGGA GCTGGGCCTG AGCGAAGCGA CGCTCCAGGC TCGGCTGGAG ACCCTGGAGC GCCAAGGCAA GACAGCGATC CTGCTGATGG ACGATGCGAC CGTGCTCGGC ATTTTTGCAG TGGCCGACAC CGTGAAGGAA ACCAGCCGTG AGGCGGTGGC CGACCTGCAG GCGCTGGGTG TGCGCACGCT GATGCTGACG GGGGACAACC AGCACACGGC CGCGGCCATC GCTGCCCAGG TCGGAATCTC TGAAGCCCGT GGTGACCAAC TGCCCGAAGA CAAGCTCAAG ACCATCGAAA GCCTGGTCGG CGGCGAGGGC CAGGTGGGCA TGGTGGGCGA CGGCATCAAC GATTCGCCCG CGCTCGCCCG TGCCGACATC GGCTTCGCCA TGGGCGCGGC CGGCACCGAC ACCGCGATCG AAACAGCCGA CGTCGCCCTG ATGGACGACG ACCTGCGCAA GATCCCCGCC TTCATCCGGC TGTCGCGTAG CACTGCGGCG ATCCTCACGC AGAACATCGT TCTGGCCCTT GGCATCAAGG CGGTGTTCCT TGCGTTGACG TTCACAGGGC ATGCCACCAT GTGGATGGCT GTGTTCGCTG ACATGGGGGC AAGTCTTTTG GTTGTCGTCA ATGGGCTGCG CCTCCTGAAG TTCAAGGCGG CATGA
|
Protein sequence | MMASGENLVN EERSMNKEPS SPCACSGGNG QQTACASEQA STETTVFHVS NMDCRNEEAL VRRTLEGMPG VERLLFDLPQ RLLTISHREV SADALEQALN SVGMKAQAVR DAAVSTTYRI ENMDCPSEEK LIRSHLGAVE GIQDLDFDLA ERTLSVKHLA QARAQMEQVL ASIGMRAKEQ TFGHTGPIEA AAVIPSSALQ QQPTAAVSAP PIGERVTYRI ENMDCPTEEA LIRDRLGKLP GVTALDFNLM QRVLGVQHTL ATSAPIEKAL ASIGMQAARQ DMQTATTVLR IAKMDCPTEE SLIRGKLQGM PGVQGMDFNL MQRTLTVRHT PDAIKPAVEA IESLGMEAEV QRTDEPRDAP VAAHKTNWWP MAVSGVAAVA AEGVYWVNDG NHWAVIVLAL VSIFTGGLST YKKGWIALKN LNLNMNALMA IAVTGGMAIG HWPEAAMVMF LFALAEVIEA KSLDRARNAI RGLMDLAPET ATVRQADGSW TELPAKEVAK GAVVRVRPGE RIALDGLITS GRSAINQAPI TGESLPVEKA EGDQVFAGTI NETGSFEYKV TAGASDSTLA RIIHAVESAQ GSRAPTQRFV DQFARVYTPA VFAVSVLVAV VPPLAFGGAW FDWVYKALVL LVIACPCALV ISTPVTIVSG LAAAARRGIL IKGGVYLEGG RKLKALALDK TGTLTHGKPE QTDFVPLIGE AQEVAAWAAS LAARSDHPVS QAIARKANRD GIALHEVDDF AALPGRGVRG RVAGRMLHMG NHRLAQELGL SEATLQARLE TLERQGKTAI LLMDDATVLG IFAVADTVKE TSREAVADLQ ALGVRTLMLT GDNQHTAAAI AAQVGISEAR GDQLPEDKLK TIESLVGGEG QVGMVGDGIN DSPALARADI GFAMGAAGTD TAIETADVAL MDDDLRKIPA FIRLSRSTAA ILTQNIVLAL GIKAVFLALT FTGHATMWMA VFADMGASLL VVVNGLRLLK FKAA
|
| |