| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3380 |
|---|
| Symbol | |
|---|
| ID | 5456648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3619723 |
|---|
| End bp | 3620283 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640878970 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001414641 |
|---|
| Protein GI | 154253817 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.108778 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCAC CTAACCCACT CAACCAGGCC GTCATCGCGC AGGCGCTCTA CGATCTGCGC
AACGGGCAAC TGCGCCGCTG CAAGGCGATG GGATTCGGTG AGGAAGAATT GGATGCGCTC
AAGCATCCGG CGCTGATCAG CGTACTGGCC AATGCCAGCG TCTCGTGGTG CTCTGTCTCG
GTGAACCGGG AAGTGCTCCG GCGATTGCTC AAACAGGCGC AGGACGTGGA GAAGGAGATC
GCCACCGTCG ATCGCATGTT GCGCCTGGGG GCCAGTACGG AAATGGCGAG CCGTTTTTAT
GGGCTGACGC ACCAGGAAGT CGCGCTACGG CGTGAAGTTC TCGGCCTGCC CAAACGCAAG
GGGCGCCATC CGGTTCTGGA CGAGGAGCAG GACACCGAGC TGTGGCGACG CTGGAAGGCC
GTGACCAGCA GCAGGAATGT CGAGCTGGAG GATGAGACCT CGGTTCTTGA TGCGGCAATG
GACCTCGCCG AAGGCATGGA ACTGCCGCTG TCGGTGGTCT GGGCTGCGAT CAAGAACTGG
ATCGATCAGG GATTGGGTTG A
|
|---|
| Protein sequence | MSAPNPLNQA VIAQALYDLR NGQLRRCKAM GFGEEELDAL KHPALISVLA NASVSWCSVS
VNREVLRRLL KQAQDVEKEI ATVDRMLRLG ASTEMASRFY GLTHQEVALR REVLGLPKRK
GRHPVLDEEQ DTELWRRWKA VTSSRNVELE DETSVLDAAM DLAEGMELPL SVVWAAIKNW
IDQGLG
|
|---|
| |