Gene Plav_3352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3352 
Symbol 
ID5453924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3590931 
End bp3592019 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content66% 
IMG OID640878942 
ProductCDP-glucose 4,6-dehydratase 
Protein accessionYP_001414613 
Protein GI154253789 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR02622] CDP-glucose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.45248 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGCATTG ACGGGCTCGA CAAGGATTTC TGGCGCGGCA AGCGCGTCCT GTTGACCGGA 
CATACGGGCT TCAAGGGCTC GTGGGCGGCG CTTTGGCTCT CGCGTCTTGG TGCGGATGTG
ACGGGATTTG CGCTTGAGCC CGATGCCGAG CCCAATCTCT TCGCTCTGGC GCGGGTAGGG
GAGGCGGTGC ACTCGCATAT CGGCGACCTG CGGGATGTGG AGGCCGTGCG CCGCGTCGTG
GCCGATGCCG ATCCGCAGAT CGTGATCCAC ATGGCGGCTC AGCCTCTCGT CCGCCGTTCC
TATGCCGATC CCGTGGAAAC CTTCGCCGTG AACGTGATGG GCACCGTCAA TCTTCTGCAG
ACGCTTCGCA CCGTGAACGC CCTTCAAACT GTGCTCGTCG TGACGACCGA CAAGGTCTAC
GAAAATGCCG AGCAGGGCAT TTCCTTTTGC GAGGATGATC CTCTCGGAGG TCACGATCCC
TATGCCGCGT CGAAGGCGGC AACGGAGCTC GTCGCCGCGT CTTATGCGCG CTCCTTCTTC
GCCGCGCGCG GCGTCCGGCT GGCAACGGCG CGCGGCGGCA ACGTGATCGG CGGCGGCGAT
TTTTCCGAAG ACCGTCTGGT GCCGGATATC TGGCGGGCGC TTCGCAAGAA CGAGCCGCTC
CTCCTGCGCA ATCCGGAGGC CGCCCGCCCA TGGCAGCATG TGCTGGATTG CCTCTGCGGC
TATTTCACCT TTGTGCGCGG GCTGGCCGAT CTGCCGGATG CACCCGCCGC CCTCAATTTC
GGTCCCCCGC ACGATGCGCC CGTGCTCACC GTCGCCGAAC TCGCAGGCGC GGTTCAGGCC
GCGCTTGGCA GCGGCGCCAT GTGGCAGCCG GCAGCTGACC GTGGTCCCCA TGAGATGGCG
ACGCTGGAAA TCGACAGCCG CCGCGCCCGC TCCCTCCTTG GCTGGCGGGA CCAGCTCGCC
GGCGCGCCCT GCGTCCAGTG GCTGGCGGAC TGGTACCGCG CCTTCAACAT GGATAGCGAC
ATGCGCGCGG TCACGCTTGA TCAGATTGCC GCTTACGAGG CGCTCTCTGC CAGGGTGGGG
CAATCATGA
 
Protein sequence
MRIDGLDKDF WRGKRVLLTG HTGFKGSWAA LWLSRLGADV TGFALEPDAE PNLFALARVG 
EAVHSHIGDL RDVEAVRRVV ADADPQIVIH MAAQPLVRRS YADPVETFAV NVMGTVNLLQ
TLRTVNALQT VLVVTTDKVY ENAEQGISFC EDDPLGGHDP YAASKAATEL VAASYARSFF
AARGVRLATA RGGNVIGGGD FSEDRLVPDI WRALRKNEPL LLRNPEAARP WQHVLDCLCG
YFTFVRGLAD LPDAPAALNF GPPHDAPVLT VAELAGAVQA ALGSGAMWQP AADRGPHEMA
TLEIDSRRAR SLLGWRDQLA GAPCVQWLAD WYRAFNMDSD MRAVTLDQIA AYEALSARVG
QS