| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3324 |
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| Symbol | |
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| ID | 5453409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3558837 |
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| End bp | 3560120 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640878914 |
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| Product | ribonuclease D |
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| Protein accession | YP_001414585 |
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| Protein GI | 154253761 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.342463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.392849 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTACC CACTTGAAAA AAAGAAGGCT TTACTTAATG TCCGGACGCG ATATCGGCAC
CCTTGGCTCC GCCCCTATTC GGACGGCATG CCCGCGACAG ACGCCACGGG ATCGGCTATA
GAGCTTTTCA TGGAAATCAT TACGACGAAT GAGGCCTTGA GGGCCGCCTG CGACCGGCTC
TCCACAGCCG GCTTTGTCAC GGTCGATACC GAATTCATGC GGGACGCGAC CTTTTGGCCG
ATTCTCTGCC TGATCCAGCT GGCGGGACCG AGCGACGAAC TTATCGTTGA TCCCTTGGCC
CCCGATCTTG ACCTCGCCCC CTTCTATGCG CTGATGAAGA ATCGGAACGT GGTTAAGGTT
TTTCACGCCG CGCGGCAGGA CATCGAAATC TTCTGCCATG AGGGCAAGGC GATCCCCGAC
CCCCTGTTCG ATACACAGGT CGCGGCTATG GTTTGCGGTT TCGGGGATTC CGTCGGCTAC
GAAACACTGG TCCGCAAGCT TGCCGGCGGC AGTGTCGACA AGTCATCGCG CTTTACGGAC
TGGTCGCGGC GGCCGCTTTC CGACAAGCAG CTTCAATACG CGATGGCCGA CGTCACCTAT
CTCCGCACTA TTTACGAGGT ACTGGCGAAG CGACTGACCC ATACGAAGCG TGCCCATTGG
GTGGCCGAGG AAATGGCGGT ACTCCAGGAT CCCGAAACCT ATGCGATGCG GCCGGAGAAT
GCATGGAAGC GCGTCAAGGC CCGATTCCGC GGCCAGCGTG GTCTCGCGGT GCTTGTCGAG
GTGGCGGCGT GGCGCGAACG TCAGGCACAA GAGCGCGACC TCCCGCGCTC ACGCGTGATG
AAAGATGACG CTCTGGCAGA AATCGCGACG CAAATCCCGC GCACAATCTC TGACCTCGAT
GGGCTTCGCG CCGTCCCGAA GGGCTTCTCA AACAGCCGCT CGGCGGCAAG CTTGATGGAA
GCCGTCGAGC GCGGTCTCGC CATGAAGGAA GAGGATATTC CGGTCGTTGA GGGGCCGGAA
CCTCTGCCCC CCGGCATCGG CCCGTTGGTC GAACTCCTCA AGGTTCTCCT CAAGATCAAA
TGTGAAGAGC ACGACGTTGC GCAAAAGCTC GTAGCCAATG TCGCAGACCT CGAACTCATT
GCCGCTCATT CGGAAGCAGA TGTAGGGGCG CTCAAGGGCT GGCGGCGGGA ACTCTTCGGT
GAAGACGCGC TACGCCTTAA GCGCGGAGAA CTTGCCATCG GCGTCAAGGG TAAGCGGATC
GTGCTGATCG AGACGAAGCG ATAG
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| Protein sequence | MSYPLEKKKA LLNVRTRYRH PWLRPYSDGM PATDATGSAI ELFMEIITTN EALRAACDRL
STAGFVTVDT EFMRDATFWP ILCLIQLAGP SDELIVDPLA PDLDLAPFYA LMKNRNVVKV
FHAARQDIEI FCHEGKAIPD PLFDTQVAAM VCGFGDSVGY ETLVRKLAGG SVDKSSRFTD
WSRRPLSDKQ LQYAMADVTY LRTIYEVLAK RLTHTKRAHW VAEEMAVLQD PETYAMRPEN
AWKRVKARFR GQRGLAVLVE VAAWRERQAQ ERDLPRSRVM KDDALAEIAT QIPRTISDLD
GLRAVPKGFS NSRSAASLME AVERGLAMKE EDIPVVEGPE PLPPGIGPLV ELLKVLLKIK
CEEHDVAQKL VANVADLELI AAHSEADVGA LKGWRRELFG EDALRLKRGE LAIGVKGKRI
VLIETKR
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