| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3320 |
|---|
| Symbol | |
|---|
| ID | 5454862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3555397 |
|---|
| End bp | 3556533 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640878910 |
|---|
| Product | TDP-4-oxo-6-deoxy-D-glucose transaminase |
|---|
| Protein accession | YP_001414581 |
|---|
| Protein GI | 154253757 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | [TIGR02379] TDP-4-keto-6-deoxy-D-glucose transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.235666 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.234706 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTAG TTCCATTTAA CGTCGCTTCG GTGCTCGGGC GCGAGATGGA GTACATTGAG
GACGCCATCA GAAGCCAGCA TATTTCCGGC AACGGAAAAT ATACCTCACT GTGCAGTTCC
TATCTGGTTG ATCACATCGG CAGTTCGGCA TGTTTCCTCA CTCCATCTTG TACCGATGCT
CTGGAAATGT CCGCCCTGCT CGCGGATCTA CATGTCGGCG ACGAAGTCAT CATGCCGTCC
TACACCTTCA CCAGTACTGC CAATGCTGTG GTGCTGCGTG GAGCCGTTCC GGTTTTTGTA
GATATTAGAC GCGATACGCT GAATATCGAC GAGACCTTGA TAGAGCAGGC CATCACCTCC
CGAACCAAAG CGATCATGGT GGTTCATTAC GCTGGCGTTG GATGTGAGAT GGACGCCATT
CTGGAGATCG CCAGGCGATA CGACCTGATT GTCATAGAGG ACGCCGCGCA AGGTCTCTAT
GCAGATTATC GTGGCAAGCC ACTCGGATCG TTCGGCCATC TCAGCGCCTT CAGTTTTCAC
GAAACAAAAA ACATAGTTTC GGGTGAAGGC GGAGCATTGA TGATTAACGA CTCTAAATTC
ATCGATCGCG GAGAGATACT GTGGGAAAAG GGAACAAATC GCGTCAAATA CAAGCGTGGC
ATCGTCAACA AGTATAATTG GGTGGATGTC GGATCGTCGT TTTTGCCAAG CGAGATTACG
AGCGCATTCC TGTATGCTCA GCTTGAGGTG GGCCGCCAGG CAACAGATCA AAGGCTTGCA
CTCTGGCAGG CCTATCACGA CGCCTTCAGA CCTCTGCAGG AAACGGGCAA GCTGTCGATT
CCCAATCCGC CAGACCATTG CGCGCATAAC GGTCATATTT TCTACATCCT GGCTCCCACG
GCCAAGCACC GCGAGATCTG GCTCGACCAG TTAGGCGTGC GGGACGGGAT CAATGCAGTC
ATTCATTATG TCCCATTGCA TTCTGCACCC GCAGGCCTCA GGTTTGGACG GAGTTGTGGG
GAGATGACCG TGACCGACGA AATTTCGGCC CGGCTGGTCC GTTTGCCACT GCATCTGCAG
TTGTCGCCAG ATGATGTCAG CAGGGTTATT CAATCCGTGG AGCGATTGCC GGTTTGA
|
|---|
| Protein sequence | MAVVPFNVAS VLGREMEYIE DAIRSQHISG NGKYTSLCSS YLVDHIGSSA CFLTPSCTDA
LEMSALLADL HVGDEVIMPS YTFTSTANAV VLRGAVPVFV DIRRDTLNID ETLIEQAITS
RTKAIMVVHY AGVGCEMDAI LEIARRYDLI VIEDAAQGLY ADYRGKPLGS FGHLSAFSFH
ETKNIVSGEG GALMINDSKF IDRGEILWEK GTNRVKYKRG IVNKYNWVDV GSSFLPSEIT
SAFLYAQLEV GRQATDQRLA LWQAYHDAFR PLQETGKLSI PNPPDHCAHN GHIFYILAPT
AKHREIWLDQ LGVRDGINAV IHYVPLHSAP AGLRFGRSCG EMTVTDEISA RLVRLPLHLQ
LSPDDVSRVI QSVERLPV
|
|---|
| |