| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3276 |
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| Symbol | |
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| ID | 5453923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3502668 |
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| End bp | 3505394 |
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| Gene Length | 2727 bp |
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| Protein Length | 908 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640878867 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001414538 |
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| Protein GI | 154253714 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.658356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.980736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAGAG TTTTCTCTAT CGTTGCGGCA GTGTTTCTCG TGCTGGTCTT CGGCGGGGTC
ATGGCCGGCA CCTATATGAT CTGGCGTCTG AACGACGACC TGCCGGATTA CTCCCGCCTC
GCCAATTACG AGCCGCCGGT CATGACCCGC GTCCATGCGG GCGACGGCCA GCTCATCGGC
GAGTTCGCGC GCGAACGCCG CCTCTACGTC CCCATCAGCG CCATCCCCGC CCGCGTCATC
AACGCCTTCC TCGCCGCCGA GGATAAAAAC TTCTACAGCC ATGGCGGCGT CGATGCGACG
GGCATCCTGC GCGCCACCAT CGACAACGTC TTCAACGTCA TGCAGGACCG CCGCCTTGTC
GGCGCCTCCA CCATCACCCA GCAGGTCGCA AAAAACTTCC TGCTCTCCTC CGACGTGACG
CTGGACCGCA AGCTGCGCGA GGCGCTGCTC GCGCTCCGCC TCGAACACGC CTTCACCAAG
GACCAGATCC TCGAGCTCTA CCTGAACGAG ATCTATCTCG GCATCGGCGC TTACGGCGTC
GCCGCCGCCG CCCTGAACTA TTTCGACAAG TCGCTCGACG AGCTCACCGT CGCCGAGGCC
GCCTATCTCG CCACCCTCCC CAAGGGCCCG AACAACTACC ATCCCTATCG CCACCGCGAA
CGCGCCGTCG CCCGCCGCAA TTGGGTGATC TCCCGCATGG AGGAAGAGCG CTTCGTCACC
GGCATGGAAG CCGCCGAGGC CCGCGCCGCC GAGCTCGACG TCTCGCTCCG TTCGCGCGGC
GTGCAGATGC GCGACGCCAA TTATTTCGTG GAACAGGTCC GCCGCGAACT TCTCGCGCTT
TATGGCGAGC AGAAGCTCTA TGAAGGCGGC CTCTCCGTCC GCACCACCAT CGACACAAGC
CTGCAGGAAG TTGTCGCCGA CGCATTGCGC GACGGCCTCA TCGCCTATGA CCGCCGCCAC
GGCTGGCGCG GGCCCGTAAA AAAGCTGGAG CCCGGCGAGA ACTGGCAGGA AGCCCTCGCG
GCGATGGATG TCGGTTCCGA CCTTGCCCCC TGGACGCTCG CCACCGTGCT CGATGTCGCC
GTCGACAAGA TCACCATCGG CCTCCGCCCG CGCCGTCTGC CGGACGGCAA GTTCGAAACC
GAAATCGTTA AGGGGACCGT GCCGCTCTCC GCCATGACCT GGGCGCGCCC CACCGTGAAC
AAGATCTATC TCGGCCCGGA GGTTAAGTCC CCGTCCGATG TCGTCGCCGT CGGCGATGTG
ATCTATGTCT CGCCGAAGCG CGACGAAGAA AAGAAGATCA CGCATTACGC GCTGGAGCAG
GTCCCCGCCG TCAACGGCGC CGCGCTGGCG ATGGACCCGC ATACCGGCCG CATCCTCGCC
ATGCAGGGCG GCTTCAGCTT CGGCCTGTCG GAGTTCAACC GCGCCGTGCA GGCGCTCCGC
CAGCCCGGCT CCTCCTTCAA GCCCTTCGTC TATGCCGCCG CGCTCGACAA GGGCTTCACC
CCGTCCTCCC TCGTCCTCGA CGCGCCCTTC GTGCTCGACC AGGGCGGCGA CCTCGGCCTC
TGGAAACCGG AAAACTACGA ACGTACCTTC CACGGTCCGT CGACGCTCCG CTTCGGCCTC
GAACATTCGC GCAACGTCAT GACGGTCCGC CTCGCGCAAT ATGTCGGCCC GGAAACCGTC
TCGGCCTATG CGCGCCGCTT CGGCATCATG GACAATATGG CGCCCGTCCT CTCCATGTCG
CTCGGCGCGG GCGAAACCAC GCTCGCCCGC CTCGTCAGCG CCTATGCCAT CCTCGACAAT
GGCGGCAAGC GCGTGACGCC GACATTGATC GACCGCGTGC AGGATCGCTT CGGCCGCACC
ATCTACCGTA AGGATGATCG TCCGTGTGCC GATTGTTCCG TCAAGTGGCA GGACGCCGCC
GCGCCGGCCG GCGACGCCTT GTTCGAGAAT GCCGGCCTCG GCCCGCAGCC GCCCCGCCTC
CCGGATAATC GCGAGCAGGT CGAAAACCCG CAAACCGCCT ATCAGGTGAC GTCGATGCTC
GAAGGCGTCG TCCAGCGCGG CACCGGCTCG GCCGTGAAGG CGGTCGGCGT GCCGCTCGCC
GGCAAGACCG GCACCACGAA CGACGGCAAG GATGCCTGGT TCATCGGCTA TTCGCCAAAT
CTCGTCGTCG GCGTCTTTGT CGGCTTCGAC GAGCCGACGC CCTTGGGCCG CGCCGAAACC
GGCGGCCGCG CCGCCGCGCC CATCTTCCGC GACATCATGA TGAAGGCCGT CGGCAACAAG
CCCGCCATTC CCTTCCGCGT GCCGCCCGGC ATCAGCCTTG TGAAAGTGAA CGCGAAAACC
GGCAAGCTCG CCGATGGCGA GGGCGCGGGC ATCATCCTCG AAGCCTTCAA GCAAGGCAGC
GAGCCGCATT TCGAATCCGC CGCGCCCACC GTCGGCCTCT TCGGCAATGT CCCCGCCGAG
GATGAAATCG CGCCCGCGCC CTTCATCGGC GGCGTCGAGC CCGGCACCCC CGGTGCCGTC
CTGGATGGCG CGCCCCCCGC CGCCGATCTT CCCCCCGGCA CGCTTGGCCA GCTCCCGCCG
GGCATGCAGC CGGCAAGCGG CCTCCCGGCC GAAATCCCGG AGGGCGGCAT CCCGACCGAC
CGCATCGAGG AAGCAACCCG CCCCTCGAAC GAAGCCCGCA CCTCCGGCAA CAACACCATC
GGCTCCGGCA CCGGCGGCCT CTACTAA
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| Protein sequence | MLRVFSIVAA VFLVLVFGGV MAGTYMIWRL NDDLPDYSRL ANYEPPVMTR VHAGDGQLIG
EFARERRLYV PISAIPARVI NAFLAAEDKN FYSHGGVDAT GILRATIDNV FNVMQDRRLV
GASTITQQVA KNFLLSSDVT LDRKLREALL ALRLEHAFTK DQILELYLNE IYLGIGAYGV
AAAALNYFDK SLDELTVAEA AYLATLPKGP NNYHPYRHRE RAVARRNWVI SRMEEERFVT
GMEAAEARAA ELDVSLRSRG VQMRDANYFV EQVRRELLAL YGEQKLYEGG LSVRTTIDTS
LQEVVADALR DGLIAYDRRH GWRGPVKKLE PGENWQEALA AMDVGSDLAP WTLATVLDVA
VDKITIGLRP RRLPDGKFET EIVKGTVPLS AMTWARPTVN KIYLGPEVKS PSDVVAVGDV
IYVSPKRDEE KKITHYALEQ VPAVNGAALA MDPHTGRILA MQGGFSFGLS EFNRAVQALR
QPGSSFKPFV YAAALDKGFT PSSLVLDAPF VLDQGGDLGL WKPENYERTF HGPSTLRFGL
EHSRNVMTVR LAQYVGPETV SAYARRFGIM DNMAPVLSMS LGAGETTLAR LVSAYAILDN
GGKRVTPTLI DRVQDRFGRT IYRKDDRPCA DCSVKWQDAA APAGDALFEN AGLGPQPPRL
PDNREQVENP QTAYQVTSML EGVVQRGTGS AVKAVGVPLA GKTGTTNDGK DAWFIGYSPN
LVVGVFVGFD EPTPLGRAET GGRAAAPIFR DIMMKAVGNK PAIPFRVPPG ISLVKVNAKT
GKLADGEGAG IILEAFKQGS EPHFESAAPT VGLFGNVPAE DEIAPAPFIG GVEPGTPGAV
LDGAPPAADL PPGTLGQLPP GMQPASGLPA EIPEGGIPTD RIEEATRPSN EARTSGNNTI
GSGTGGLY
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