Gene Plav_3186 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3186 
SymbollpxD 
ID5454986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand- 
Start bp3399927 
End bp3400988 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content60% 
IMG OID640878775 
ProductUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
Protein accessionYP_001414449 
Protein GI154253625 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
TIGRFAM ID[TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.213087 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGACA AACGCTTCTT CGAGGCAAAA GAGCCACTGT CGCTCGGCGA GATCGCCGGG 
CGCATCGGGG CCGCGCTTGC CGATGCTGAT GATGGGAGCC GTATCGTAAC CGGCGTGGCG 
CCGCTTGATA CCGCAGGCTC CAACGATCTG AGCTTTCTCG ACAATCCGAA ATATGCTGAA 
GCATTTTATG CCACAGCGGC CGGCGCCTGC ATTGTCCATC CGCGTTTCGC AGAGCGCGCG 
CCGGACAATG TTGCGCTGAT CCTCTCCGAC CAGCCTTACC GTGCCTACGC GCTTGTAGCT 
CAAATATTTC ATCCGGATGA GGCGCATGGT GCGGACACAT TCGGCGCGCG CGGTGAAATT 
CATCCAAGAG CCACGGTTCA TCCGACAGCA AAACTCGGGA CAGGGGTGAC ATTGGAGCCG 
GGCGTCACGA TTGGAGCCGG CGTAGAGATC GGCAACAACA CAGTCATCGG CACGAACACG 
AGTGTTGGCA AGGGGTGCAC AGTCGGCAAG GATTGCTTTA TCGGGCCGAA CGTCACACTC 
AGCCATGCTC ATCTGGGAGA CAGGGTAATG GTCCATCCCG GCGTACGCAT CGGCCAGGAC 
GGTTTCGGTT TCGCAATGGG CCTGCCGAGA CATGAGAAGG TGCCGCAGTT GGGGCGCGTC 
ATTGTGCAGG ATGATGTAGA GATCGGCGCA AATTCAACAG TGGATCGGGG GGCGGGCCCC 
GACACAGTGA TCGGTGAGGG AACCAAGATC GATAATCTTG TGCAGATCGG TCACAACGTG 
GAAATCGGCC GAGGGTGCAT TATTGTCTCG CAAACAGGTA TCGCCGGGAG CACCAAGCTG 
GGTGATTTCG TCGTCCTGGC GGCTCAGGTG GGTGTTACTG GCCATCTGAC AATAAATTCC 
GGCGCGCAAA TTGCTGCGCG CGGTGCTGTG GTTCATGACG TACCAGCCGG CCAGCAGTAT 
GGTGGCGTGC CGGCGAAGCC TATTGCGGAA TGGCGTCGCG AGGTCGTAGA GCTGCGCAAG 
CTTGGCAGAC GTCGCAGGTC CGGCACCAAG GCGGACGACT GA
 
Protein sequence
MADKRFFEAK EPLSLGEIAG RIGAALADAD DGSRIVTGVA PLDTAGSNDL SFLDNPKYAE 
AFYATAAGAC IVHPRFAERA PDNVALILSD QPYRAYALVA QIFHPDEAHG ADTFGARGEI 
HPRATVHPTA KLGTGVTLEP GVTIGAGVEI GNNTVIGTNT SVGKGCTVGK DCFIGPNVTL 
SHAHLGDRVM VHPGVRIGQD GFGFAMGLPR HEKVPQLGRV IVQDDVEIGA NSTVDRGAGP 
DTVIGEGTKI DNLVQIGHNV EIGRGCIIVS QTGIAGSTKL GDFVVLAAQV GVTGHLTINS 
GAQIAARGAV VHDVPAGQQY GGVPAKPIAE WRREVVELRK LGRRRRSGTK ADD