Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3168 |
Symbol | |
ID | 5454659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3379794 |
End bp | 3381689 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640878757 |
Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
Protein accession | YP_001414431 |
Protein GI | 154253607 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0864433 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.0183714 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGATT CACTACGGAG AAACGCCTCG GGCTGGGTTG CCAAGGTGCT GATCGGCCTG CTCGCGCTCA GCTTCGCGGT CTGGGGCATC GCGGACATCT TCACCGGCTT CGGCGGCGAT ACGGTCGCGG AAGTGGGCGA CCAGAAGATC GACGCCGCGA CCTATCAGGT CGAGCTCCGC AACGAGATGA ACCAGTTCTC CCAGCGCCTC GGGCAGCCGC TGTCGCTCGA CCAGGCGCGC CAGTTCGGCA TCGACCGCGC CGCTCTGTCG CGGCTTATCA GCCTTGCGGC CCTGGACGGC GCGGCAAGCG ACCTCGGCCT TGCCGTGGGC GATGAGGCCG TCGGCATCGA CATCACGACC GACCCCAACC TGCAGGGCCC CTTCGGCCGC TTCGACCGCG ACCTTTTCCG CCAGTCGCTG CAGCAGAACG GCATTTCCGA AGAACGCTTC ATCGAGCAGC GCCGCCGCGC CATGTCGCGC AAGCAGGTCA TCGAGGTGAT CCAGGTCGGC GTCGCCGCGC CGGAAGCACT TATCGAGATG GTGAGCCGCT TCCAGGAAGA GACCCGCGTC GCAGGTTACG TCATCCTGCC GCAATCCCTT GTCGGCGAGA TCGCCGATCC GGACGAGGAG ACCGTTCAGA AATTCTATGA AGCCGGTGCT TCCGCCTTCA CGCTCCCGGA AACGCGCGAC TTCAGCATCA TGGTCCTCGA GCCCGAGGAT GTGACGCGCA CGATGGCCGT GTCGGAAGAA GACCTCCAGG CCGCCTATGA GCAGCGCCGG GGCGAGTATG ACGTGCCGGA GCGCCGCGAC GTTCATCAGA TCACCTTCGC CAGCGAAGAA GAGGCCAACG AGGCACTCAC GAAGCTGCGC GGCGGCGAGA ATGTCGAAAC CGTCGTTAAG GGCCTCGGCC TCACCATGAA AGATGTCGAT CTCGGCAAGG TCTCTCGCGA CGATATGCTG TCGCCCGAAC TCGCGGATGC CGCCTTCTCG CTCGAAGGCA CCGGCTATAG CGAGCCCGTG CGGGGACCGC TCGGCTGGTC GATCCTGCAT GTCACCGGTA TCGAGCCCGG CAAGCCCAGC ACCTATGAAG ACGTGAAGGA AGAGCTGCGT GCGGCAATCG AACTCGAACT GGCGCGCGAT CAGATCTACG ACATCCAGAA CACCATCGAG GACGCCCGCG CCGGCGGCGA GCCGCTCGCC GATGTCGCGA AGCGTTACAA CCTTACCGTC CGCTCCATCG ACGGCATCAC CGCCGACGGA AAGACGCGGA ACGGCGATAC GGTCGAACTG CCGGAACTGC CGGACCTCCT GAACACGGTC TATGAGAACC AGCAGGGCGA CCAGATCCCG CCGCTCGATT CCGGCAAGGA CGGCTATTAC TGGGTCGAGA TCGACGCTGT GAACCCCGCC GAACTGCAGC CGCTCGACGA AGTGCGCGAC CGCGTGGTGA GCATCTGGAA GCAGCAGAAG CGAGCTGACG ACCTGGAAGC CCTGGCCACC TCGCTCGTGG AGCGTGGCAA TGCGGGCGAG AGCTTTGAGA AGATCGCGGC GGAATATGGC CGCAGCGTTC TCTCCACGCC TCCTCTCCAG CGTTACGCGC AGAACGACAC CTTCTCGCGG ACCGCCGTCA CCCGGCTTTT CGCCGCGCCT GAAGGCGGCT TCACCTTCGG CCCGGTCGGC CTCGGTGACA GCCTCATCGT CATGCAGGTC AAGGATGTCC GCTCGCCGCA GCTCGACGCG AACAGCGACA AGTACAAGGA GACGCGGACA ACCCTGGTCG ATGCGATACA GGCCGACATG CTGCAGACCT TCGTCGTCGG CTACCAGCAG GAGCTCGGCG TCGAGGTCAA CAACACGCTG TTCCAACAGA TGACGGCGAC GGACACCGGC CTATGA
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Protein sequence | MLDSLRRNAS GWVAKVLIGL LALSFAVWGI ADIFTGFGGD TVAEVGDQKI DAATYQVELR NEMNQFSQRL GQPLSLDQAR QFGIDRAALS RLISLAALDG AASDLGLAVG DEAVGIDITT DPNLQGPFGR FDRDLFRQSL QQNGISEERF IEQRRRAMSR KQVIEVIQVG VAAPEALIEM VSRFQEETRV AGYVILPQSL VGEIADPDEE TVQKFYEAGA SAFTLPETRD FSIMVLEPED VTRTMAVSEE DLQAAYEQRR GEYDVPERRD VHQITFASEE EANEALTKLR GGENVETVVK GLGLTMKDVD LGKVSRDDML SPELADAAFS LEGTGYSEPV RGPLGWSILH VTGIEPGKPS TYEDVKEELR AAIELELARD QIYDIQNTIE DARAGGEPLA DVAKRYNLTV RSIDGITADG KTRNGDTVEL PELPDLLNTV YENQQGDQIP PLDSGKDGYY WVEIDAVNPA ELQPLDEVRD RVVSIWKQQK RADDLEALAT SLVERGNAGE SFEKIAAEYG RSVLSTPPLQ RYAQNDTFSR TAVTRLFAAP EGGFTFGPVG LGDSLIVMQV KDVRSPQLDA NSDKYKETRT TLVDAIQADM LQTFVVGYQQ ELGVEVNNTL FQQMTATDTG L
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