| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3163 |
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| Symbol | |
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| ID | 5454876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3375988 |
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| End bp | 3376536 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640878752 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001414426 |
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| Protein GI | 154253602 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0261464 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.157663 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACGATC TCGGCTGGTA TGTCGAAAAG GAAATCCCGC ATCTGCGGCG ATTTGCGAAA
TCGCTCTGCC GCTCGGCGGA AGAGGGCGAC GATCTTGTGC AGGACACGCT GGAGCGCGCC
TGGAGCAAAC GTCATCAATG GCGGCGCGAC GGTTCCGTGC GCAGTTGGCT CTTCCGCATT
CTCTACCGCC TGTTCCTGAA CTCGCGGCGC GGAACGAAAC GGAGCCCGGA AGAAATCGAC
GACGAGACAC TGGCGGATCC GAAACATGCG CATACAACGC CGCAGGAAGC GCAGTTGATG
GCGAATGAAA TGTCGCGGGC GCTGGCGGCA CTGCCGCACG AACAACGCGC GGCGGTGGTG
CTGATCGCAC TCGAAGGCGC AAGTTACGAC GAGGCGGCGT CGATGCTCGA CATTCCGATC
GGCACACTTC GCTCGCGGCT GTTTCGCGGA CGTGAAGCAT TGCGCGAAAC GATCGACCGC
GACGCAATCG ACCGCGAGGA GACGGATACC GTCCGCCCGA TGCCGGCGCG GTTGAGGAGA
GTGAAATGA
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| Protein sequence | MDDLGWYVEK EIPHLRRFAK SLCRSAEEGD DLVQDTLERA WSKRHQWRRD GSVRSWLFRI
LYRLFLNSRR GTKRSPEEID DETLADPKHA HTTPQEAQLM ANEMSRALAA LPHEQRAAVV
LIALEGASYD EAASMLDIPI GTLRSRLFRG REALRETIDR DAIDREETDT VRPMPARLRR
VK
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