| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3162 |
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| Symbol | |
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| ID | 5453819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3375089 |
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| End bp | 3375991 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640878751 |
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| Product | putative transmembrane anti-sigma factor |
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| Protein accession | YP_001414425 |
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| Protein GI | 154253601 |
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| COG category | [K] Transcription |
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| COG ID | [COG5662] Predicted transmembrane transcriptional regulator (anti-sigma factor) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0817681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.182433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGATG AGAGACCGGT CCCGGAAAGG ATATTCACGG AAGACATGCT GAAGGCGGGA
CTTCATGCCT ATGCCGACGG AATGCTGGAC GACGACCCGG CATTGCGGGC AGCGGTGGAA
GCGCGCCTCG CCTCCGATCC CGCTGCGCGG CAAGAGGTCG AAGACTGGCA GGCGATCAAC
GCCGCCATAC GCGCATCCCT CCCGCCCATG CACACTCTGC CGCCACGTCT TGCCAACGCT
TTCGGACCGG GGAGGGGACG GAAGCCCCGA TATCGTGTCA TGGCGGCGGC CTCCGCGATG
GCGGCGATGC TGGCGCTTGG TTTCTTCACC GGCCAACATG CGGGCGATGT GCGCGGAAGC
GGACCGGAAA TGGCTGCGGG CCTGCCCGCA GACGTCGTGG CCGCGATGAG CGAGGAGCGG
GGCCTCACCG CGCGGCCGGT CGCAGATGCG GCAATGGCCG GCATGGACGC TGCGCGCGCC
GAAAGGATTG GTCTGCCGCG CCTCGAAATG CTGCGCGCCG CGCCAGACCT TTCCGGCGCC
GGATTTGGCC TGAAACATTT CTCGCGGATG GCGGCCGGAG ACGGACAGCC GATGCTGAGG
GCGACTTATG TCAACGCTGA TGGCGAGGAG GTGGAACTGC TCGTGATGGC GATGCCGAGC
CGGGAGGTTG CACCCGCAGG CGATGGCGGC CGGGTCTTCT GGTCTGACGG ACACCTCGCC
TATGGCCTCA CGGCAGCGCA TGGCGCGCCT GACCTCGATA TACTCGCCAA GCTGGCCGCC
GAGCCGCATA ACTGGGACAT TGCCCTTGAA ACCCGCGAAG CGGCCAATGG CCCCATTCTC
TCTTCTCCGG CGGCCAGTTC TCCCGGAATT CAGCCGATCA CCACTCCCGG CCCGCCTTCA
TGA
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| Protein sequence | MTDERPVPER IFTEDMLKAG LHAYADGMLD DDPALRAAVE ARLASDPAAR QEVEDWQAIN
AAIRASLPPM HTLPPRLANA FGPGRGRKPR YRVMAAASAM AAMLALGFFT GQHAGDVRGS
GPEMAAGLPA DVVAAMSEER GLTARPVADA AMAGMDAARA ERIGLPRLEM LRAAPDLSGA
GFGLKHFSRM AAGDGQPMLR ATYVNADGEE VELLVMAMPS REVAPAGDGG RVFWSDGHLA
YGLTAAHGAP DLDILAKLAA EPHNWDIALE TREAANGPIL SSPAASSPGI QPITTPGPPS
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