| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3145 |
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| Symbol | |
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| ID | 5454093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3360122 |
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| End bp | 3362485 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640878735 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_001414409 |
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| Protein GI | 154253585 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.394815 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACCAA GCTACACATG CAGATTCACG CCCGGCCTTC TGGCCGGAAC CGCCATCGCG
CTTTGCCTCA CGCTCGGCGC CTTTTCAAAA ACCGTTTGGG CGCAGGAAGC TGAGCCTGCG
GCCATCGACG ACGAGCAGGA AAAATCCGAA GCGAACGAGG AGACTGAGGC GAGCACAAAG
CCGATCTCGC CCGCCTATAA ATTCACGCCA GTCACCGTGA CCGCGACCCG CAACGAACGC
TCCCTGCTGG ATACGGCCGG CAACATTACC CGCATCACGT CTGACGATCT CGACAAGCGG
ATGGACAACA CCATCGCCGA AACCTTCCGC TATGAGCCCG GCATTGTCGT GCCGCGGCAG
GTAAGCGGCG CCGATCCGTT CGATAGCAAT GGCGGCATCC AGATTCGCGG TGCCGGCGGC
AATCGAACGC AAATCATCGT CGACGGGTCG CGCACGCTCG AGGGCATCAC CGACAACACG
CGTGACGTTG TCGACACAAG CAACATGAAG GCTGTCGAGA TCGTCCGTGG ACCGACTTCC
GTTTTATGGG GATCAGATGG CCTCGGCGGT GTCGTCAATT TCATAACAAA AGACCCGGTG
GATTATTTCA AAGACGCAGA CGATATGGTG GCGGGGAATG CAAGCGCTCA TTACAGCTCG
CTCGACAATT CATATGTCGA ATCCGTTACC GGCGCCTTTC GCCTGACGAC TGGGCCGAAT
CCTCTCGAGG CTCTGTTCAC TTTCACGCGG CGCGACGCGG AAGAACCTGA ACTCAGCAAC
GCGCGCAATG TGGCGACGCC TGACGGCACC ACCTGCCCGC GCGACCCGGC CGCAACGCCG
TGCAATGAAT TCGATCCGCG AGATATCACT TCAAACAATC TTCTCACAAA GCTTGTCTGG
TCACCGTCGG CGAATAATCA GCTCCGGCTG ACGGGCGAAT ACTTCACCCG GGAAACAACG
GTCGACCAAA ATTCATCCAG GGAAACAACC GCGACATACA CGCAGACAGG GTATCGCCGG
GTACAGGACA TCCAGCGTTG GCGCATCGCG CTGGATCAGG ACTGGCAGGT TGGTCTCCCT
TGGCTCGACG CGTTGAAGTG GCAGCTCAGC TATTCGCCTC AGGAGATCAA ACATAGGGGC
GACAGGCGGA GGATATTGCT GCCGTCCAAC GACGATCAGC AATTGCTCTA TACGCTGGAC
TATTCCGAAA CCTTTTACGA AGCCGACATC CAGCTCAACT CCAGCTTCAA TATTGGAGCC
AGCTCGCACG CACTCACCTA CGGGTTCGAT GGCGACTATG CCGAAACGGA ATATTTTCGC
CGCGATATCA CCAACAACCT GACGACTGGC ACATCGACAA CTGCAGTTGC GGGTGGCTTC
AACTTCGCAG ATGCAGAAAC CACCCGCGCC GACATTTACG TTCAGGATGA AATCGGCCTG
TTCGGCGAGC GCCTGACACT GACACCTGGA GCGCGCCTTT CCACTTACAA GATCACACCA
GACCCCGGCC CCGGCTATCA GATTGTACCC GGCGCCGAAC CGCGCGAGAT GGAAGAGACG
GACCTGCAGC TGAAATTTGG AGCCATCTAC GACGTGTGGG GCCCCTATTC CGTCTATGGT
GCGTATGGCG AGGGCTTCAA GATGCCTACC GCGCAGCAGC TCTACCAGTC GCTCAATAGT
CTGCCTTTTT TCGCCCTGGT GCCAAACCCG AATCTCCGTC CCGAATCCGT GAAGAACTAC
GAGGCCGGCC TGCGCGGCTC GTTCGAGCGC GGCTATTTCT CCATCAACTA CTTCAAGGCC
GACTACGAAG ATTTCATACA GAACTTCGTG CCGGTGGCAG GATCGGCAAC GGATTTGACC
TATGCCAATC TTTCCCGCGT GAATGTCTGG GGCATAGAAG CTTCCGGCGG CTACCAGTTC
ACACCTAACT GGCGTACCAA CTTTTCTGCC GCGCACATGC GCGGCAGCCA GCAGGTCACG
GCGGGCGCGC AGGAAACAAC ATTCAACGGA GCGCCGCCGC TCAATGTCGT CATCGGCCTC
AATTATGTGG AGCCTGCCTA CGGTCTCGAC ATCGAGTTGG TGTCGACCCT GCAGAAGGCA
ACCACGCGCG TCGAAGATCG CGCCACCGAC TTTGCACCGA GCGGCTATGC AATCCTTGAT
CTCCTGACGT CATGGGAAGT CGTGCCCGGC GTGAAGTTGC GGGCCGATGC CTACAACCTT
CTCGACCAGC GATATTTCGC TGCGGGCAAC GCCGGTTTCC CGATCGGTAC CGATGCGACA
TTGGCGGTTC AACGGCTCAA TCCGATTGAA CTGCAGGTTG GTTACGGAAG GTTCGTGAAG
GTCGGTCTCG AACTGACCTT CTGA
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| Protein sequence | MSPSYTCRFT PGLLAGTAIA LCLTLGAFSK TVWAQEAEPA AIDDEQEKSE ANEETEASTK
PISPAYKFTP VTVTATRNER SLLDTAGNIT RITSDDLDKR MDNTIAETFR YEPGIVVPRQ
VSGADPFDSN GGIQIRGAGG NRTQIIVDGS RTLEGITDNT RDVVDTSNMK AVEIVRGPTS
VLWGSDGLGG VVNFITKDPV DYFKDADDMV AGNASAHYSS LDNSYVESVT GAFRLTTGPN
PLEALFTFTR RDAEEPELSN ARNVATPDGT TCPRDPAATP CNEFDPRDIT SNNLLTKLVW
SPSANNQLRL TGEYFTRETT VDQNSSRETT ATYTQTGYRR VQDIQRWRIA LDQDWQVGLP
WLDALKWQLS YSPQEIKHRG DRRRILLPSN DDQQLLYTLD YSETFYEADI QLNSSFNIGA
SSHALTYGFD GDYAETEYFR RDITNNLTTG TSTTAVAGGF NFADAETTRA DIYVQDEIGL
FGERLTLTPG ARLSTYKITP DPGPGYQIVP GAEPREMEET DLQLKFGAIY DVWGPYSVYG
AYGEGFKMPT AQQLYQSLNS LPFFALVPNP NLRPESVKNY EAGLRGSFER GYFSINYFKA
DYEDFIQNFV PVAGSATDLT YANLSRVNVW GIEASGGYQF TPNWRTNFSA AHMRGSQQVT
AGAQETTFNG APPLNVVIGL NYVEPAYGLD IELVSTLQKA TTRVEDRATD FAPSGYAILD
LLTSWEVVPG VKLRADAYNL LDQRYFAAGN AGFPIGTDAT LAVQRLNPIE LQVGYGRFVK
VGLELTF
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