| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3144 |
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| Symbol | |
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| ID | 5454099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3358005 |
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| End bp | 3359918 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640878734 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001414408 |
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| Protein GI | 154253584 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.369096 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTGA TGAAACGTGT GACGAGCAGC GTCCTGAAGA AAGCCGGATG CCGGGATATG
CTGCTGCTCG CCGCTGCGCT GACGTTTGCA CCATATGGAA GCGCGAACGC GGCGACCGAC
CTGTTTCACG TAATGGCTTC AGAGGCTCCT GCCTACCCGG CACTCGCAAT CGGCCGCGAG
CCGCTATACG GCGAGAGCTT CACGCACTTT CCCTGGGCCA ATCCGGATGC GCCGAAAGGT
TGCCGTCTGA CCGAGTCGGC GCGCGGTTCA TTCGACAGCC TTAATCCCTG GATCGTGAAA
GGCCGCTCTC CGACGCCCAT TCACGGGGTC CTCTATGACA GCCTTCTCGC CGGCTCGCCC
GACGAGGACA TGGTGGCTTA TGGCCTGATC GCGAACCGCG TCGAGGTCTT CGAGGATGGA
CGGCGGGTTG TCTTTCACAT CGATCCCCGC GCTGTCTTTC ATGACGGCCA TCCGGTGACG
GCGTCGGACG TTCTCTTTTC CGCGCAGGCC TTTGAAAAGA ACGCGCGACC GTTCTGGCAG
TTGATGTTGA AACGCCTGGA GGTGCGGGCG CTGGACGAAC GGACCGTCGA ACTGCGGCTT
CCAGCCGACA TGGAGAAGAC AGCCATTCTG GAATTTGCGG AAATGCCCGT GATCCCCGAG
CATTATTGGC GCCAGCATGA TTTCGGTGCG ACGACGCTCG ACCCCTTTCT CGGCGGCGGG
CCCTACAAGA TCGGCAAGGT GGATGCCGGG CGTCGAGTGA TCCTCTCGCG CGTGGAAAAC
TATTGGGCGC GTGATTTGCC TGTGAACAAA GGCCGCTTCA ATTTCGACGA ACTTGCCTAC
GAGTATTTCT TCGACGAGAT CAGCGGCTTT CAGGCGTTTC TCGCCGGCGA CATCGACAAG
TTTGTGGACG GCAATGCACG ACGCTGGCAG ACGATGTATG ACACTCAGGC TGTGCGCGAC
GGGCGCATTA AACGGTATCT TGTTGAGGCT TGGTGGCCAC TCGGCATGAA CGGTTTTTTC
TTCAATTTAC GGGATCCGCG CTTTGCCGAC ATTCGCGTGC GGCAGGCATT GTCGCTGCTG
TTCGATTTCG AATGGCCGAA CAAGAACGTG TTCCACGGCG CATATAATCG AACGGAAAGT
TATTTTCAGA ATTCCGAGTT CGCCGCCACC CAACCTCCTA TGAAAAAAGA GAAGGCGCTG
ATGGAGCGCT GGAGAGATGA TTTGCCGGAA GAGGCATTCG AGGAAGCGTG GAAAGCGCCG
GTGACGGATG GCAGCGGCCG CGACCGTGAG AATTTTCGCC GGGCGCTCGA TCTCTTCGCC
GAAGCTGGCT GGCCTTATAC GAATGGCGCC ATCCGCAACC GGGATACGGG CGAGGTGCTT
TCCTTCCGTA TACTTACGAA CAGCCAGTCG CAAGAGGCGG TGCTTAATCC GTTCTTCAAC
AATTTAAAAC GGGCAGGTGT GGATGCAGGC CTCGAGGTGC TGGATAATTC GGCCTATGAG
GCACGACTGA GGGAGCGTCG CTTCGACATC GCCTACCGTT TCTATATTCC TCCGGTCAGT
CCCGGCGAAG AACAGCTCCG CATGTGGGGA TCGCCCGCGG TGCAGCGCGA CGGCGTGGAA
AACCTGATCG GCCTCGACAG TCCGATGGTG GATGAATTCG CGGAGAAGCT TTCAGAAACC
CGCACGCTCG ACGACAAGCG GCTATACGCC CGCCTTCTCG ACCGGGCACT CCAGTGGGGT
GTCTATGTGA TTCCGTCATT TTACGACCCG CACGCCATGG GAAGGATCGC CTATTGGGAC
CGCTTTGCCA TGCCCGCCAC CCGCCCGAAA AGCGGCACCG GGGCCGAGAC CTGGTGGTGC
AAGGCGGCGG AACAAAAGGC GGCGTCCTAC CCCGTTGAAA ATGACCGCTT CTGA
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| Protein sequence | MTLMKRVTSS VLKKAGCRDM LLLAAALTFA PYGSANAATD LFHVMASEAP AYPALAIGRE
PLYGESFTHF PWANPDAPKG CRLTESARGS FDSLNPWIVK GRSPTPIHGV LYDSLLAGSP
DEDMVAYGLI ANRVEVFEDG RRVVFHIDPR AVFHDGHPVT ASDVLFSAQA FEKNARPFWQ
LMLKRLEVRA LDERTVELRL PADMEKTAIL EFAEMPVIPE HYWRQHDFGA TTLDPFLGGG
PYKIGKVDAG RRVILSRVEN YWARDLPVNK GRFNFDELAY EYFFDEISGF QAFLAGDIDK
FVDGNARRWQ TMYDTQAVRD GRIKRYLVEA WWPLGMNGFF FNLRDPRFAD IRVRQALSLL
FDFEWPNKNV FHGAYNRTES YFQNSEFAAT QPPMKKEKAL MERWRDDLPE EAFEEAWKAP
VTDGSGRDRE NFRRALDLFA EAGWPYTNGA IRNRDTGEVL SFRILTNSQS QEAVLNPFFN
NLKRAGVDAG LEVLDNSAYE ARLRERRFDI AYRFYIPPVS PGEEQLRMWG SPAVQRDGVE
NLIGLDSPMV DEFAEKLSET RTLDDKRLYA RLLDRALQWG VYVIPSFYDP HAMGRIAYWD
RFAMPATRPK SGTGAETWWC KAAEQKAASY PVENDRF
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