| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3131 |
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| Symbol | |
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| ID | 5456916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3344359 |
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| End bp | 3345384 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640878721 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001414395 |
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| Protein GI | 154253571 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.187121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.248814 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCATAT CCCTCGGATC TCATTCTCTG AAAAACCCGG TTTTGCTTGC CCCGATGGCC
GGCGTTACCG ATCTCCCTTT CCGGCGGGTC GCCCATCGCC TGGGAGCGGG CCTTGTCGTC
TCCGAAATGG TGGCGAGCGA TGAACTGGTC CGGGCCCGTC CCGATGTCGT TCGCCGTGCC
GCCGGCGCGG GCGAGTTTGC GCCCCTCGCA ATCCAGCTCG CCGGCCGGGA AGCCCATTGG
ATGGCGGAAG GCGCTCGCGT CGCCGCCGCT GCCGGCGCCG ACATTATCGA CATCAATATG
GGCTGTCCGG CGAAACAGGT CACAACGGGG CTTTCCGGCT CCGCTCTGAT GCGCGATCTC
GATCACGCGG AAAGCCTGAT CGAGGCGACG GTGGGCGCGG TTTCTCTCCC GGTTACGCTC
AAGATGCGGA CAGGTTGGGA TGATACGAAG CGCAATGCGC CCGAACTCGC GCAAAGGGCT
GAGGCCTTGG GCGTGAAAAT GGTGACTGTG CATGGCCGAA CACGCTGCCA GTTTTACAAG
AGCAGGGCCG ACTGGAACTT CATTTCCGAA GTGAAGAAGG CCGTCTCGAT ACCGGTGATC
GCCAATGGCG ACGTTACGAG CGAGGAAGAC GCGCGCGCGA TCCTCGATGC CTCCGGCGCA
GATGGCGTGA TGATCGGCCG TGGCGCCCAG GGGCGGCCCT GGTTCCTTGC GCAGGTCGCG
CAATTTCTCT GGACCGGAGA GAAGCGCGCC GCGCCGGCAT GGGAAACACA GGCGGAAATC
GTTGCCGGCC ACTACCGGGA CATGCTGGAT CACTACGGCG AGGCGCTGGG CATTCGCGTC
GCGCGCAAGC ATCTCGTCTG GTATCTCGAG GAAGCGTCGC GGCGTCTGCC CGAGGAAGCG
ATGGCAACGA AGCGCGCAAT CGTCCGCATG ACGGAGCCAC AGGCCGTCCT TGCCGCCATG
GGCGCGTTCT ACGCACATGC GGCTGAAGTC GCGCCTGCGG ATGAAATGGA CAGGGAGGCC
GCGTAA
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| Protein sequence | MTISLGSHSL KNPVLLAPMA GVTDLPFRRV AHRLGAGLVV SEMVASDELV RARPDVVRRA
AGAGEFAPLA IQLAGREAHW MAEGARVAAA AGADIIDINM GCPAKQVTTG LSGSALMRDL
DHAESLIEAT VGAVSLPVTL KMRTGWDDTK RNAPELAQRA EALGVKMVTV HGRTRCQFYK
SRADWNFISE VKKAVSIPVI ANGDVTSEED ARAILDASGA DGVMIGRGAQ GRPWFLAQVA
QFLWTGEKRA APAWETQAEI VAGHYRDMLD HYGEALGIRV ARKHLVWYLE EASRRLPEEA
MATKRAIVRM TEPQAVLAAM GAFYAHAAEV APADEMDREA A
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