| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3125 |
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| Symbol | |
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| ID | 5455197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3335583 |
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| End bp | 3336440 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640878715 |
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| Product | aminotransferase class IV |
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| Protein accession | YP_001414389 |
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| Protein GI | 154253565 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01121] D-amino acid aminotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.427478 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTCACGTA TCGCCTATGT CAACGGCCGC TACCTGCGCC ACGCGGAGGC GAGCGTCCAT
ATCGAAGATC GCGGCTATCA GTTCGCCGAC GGCATCTATG AAGTCTGCGG TGTTCGCGGC
GGCATGTTGA TGGACGAAAC GCTGCACCTG GAGCGGATGC AGCGCTCGCT CGGAGAGCTG
CGCATCGCCT TGCCGGTAAA GCTCCCCGCC CTGCGGCACA TTCTGCGCGA GGTCGTTGCC
CGAAACCGGA TAAAGAACGG CATGGTCTAT TTCCAGATCA CCCGTGGCGT GGCGCCGCGC
GATCATCCGT TTCCATCCGC CGCAACCCGG CCGGCCCTTG TGGTCACGGC AAAGCGTCTC
AACGAAGCCC GTGTCGCAAT CGCGGTGGAG AAGGGCGTCG CTGTCGTCAC CATGCCGGAC
CTGCGTTGGG CGCGGCGCGA CATCAAGTCA GTGGCGCTGC TGCCGAACAT CCTGGCAAAG
CAGGCGGCGC GGGAAGCGGG CGCCTACGAA GCCTGGCTTG TCGATGCTGA GGGCTATGTG
ACGGAGGGCT CTTCCACCAA TGCCTGGATC GTGGATGCGG AAGGCCGTCT GGTCACGCGC
CCTGCCGGTC CGGATATCCT GAACGGCGTT ACCCGGCGGG TTCTGCTTGA GGCGGCAAAG
CGGGAAGGGA TCGAAGTCAT TGAGCGGGCG TTCACCCCCG AAGAGGCAAA AACCTCGCGA
GAAGCATTCA TCAGCGCCTC ATCGGCCGTC CTGATTCCGG TGGTCCGGAT CGACGGCGAG
CCAGTAGGTA ATGCCGCGCC CGGGTCCACC ACGCTCCGGC TGCGCGATGC CTATCGGCAG
ATCGGCGAGC TTTCCTGA
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| Protein sequence | MSRIAYVNGR YLRHAEASVH IEDRGYQFAD GIYEVCGVRG GMLMDETLHL ERMQRSLGEL
RIALPVKLPA LRHILREVVA RNRIKNGMVY FQITRGVAPR DHPFPSAATR PALVVTAKRL
NEARVAIAVE KGVAVVTMPD LRWARRDIKS VALLPNILAK QAAREAGAYE AWLVDAEGYV
TEGSSTNAWI VDAEGRLVTR PAGPDILNGV TRRVLLEAAK REGIEVIERA FTPEEAKTSR
EAFISASSAV LIPVVRIDGE PVGNAAPGST TLRLRDAYRQ IGELS
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