| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3099 |
|---|
| Symbol | |
|---|
| ID | 5455395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3310663 |
|---|
| End bp | 3311955 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640878688 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001414363 |
|---|
| Protein GI | 154253539 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0643355 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.382365 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCTG GCCCCGAGCC AGAAGACCCG CGCGCCTCGC CGCGCGGCGG TCTCTTTTAC
GGCTGGTACA TCGTCGGCAC GGTCTTTGTC ATTCACACCG TGTCCTGCGG CCTGATCTTC
TACAACCTGT CGATCTTTCT GAAGGCCTTT GTCGTCGAGG GCGGGTTTTC CGTCTCTGCC
ACTTCGAATG CCACGGCGCT CTTTTTTATC TCTTCAGGGA TTGCGGGCCT CGGCGTCGGC
TGGCTGCTGG ATCGCTACGA TCCGCGCTGG GTGGTGACTT TCGGCGCTTT TCTATCCGCA
GGCGTGCTCG CGGGTGCAGG CCATGTGGAC GAGCTGTGGC AGCTTTATGG CTTCTACATT
CTGTTCGGCA TCGGCAATGC GGCGGTGGCC GTCATTCCCG GTATGACCAT CGTCGCGCGA
TGGTTTACGC GCCAGCGATC GAAGGCGATT GCATATGCCT CTACGGGACT TTCGTTGGGC
GGCATCGTCT TTACGCCGAT TTCCGCCACG CTTGTCGAGA GCTACGGACT TGGCGAGGCG
GCATACTGGC TTGCGTTCAC GCTCGTACTT GGCGTCGTTC CTGTGGCGTT GATCATGTTG
CGCAAAAGCC CTGAATCTAT TGGACTTTCG CCCGATGGAG ACCCACCTCG CCTCGCTGCG
GACGGCAGCC GGTTGCCGCC TGATGGCGTC TCCTTCAACG ATGCAATCCG CAGCCGCTTC
TTCATTTTTT GTACGGCTGC CTTCGTTTTT TCGATGATGG CGCAGGTCGG ATCGCTGGCG
CATCAGTTCC GTCTCGTGGC GACGCGGACG GGGGATGACC ATGTTGCGGC GCTGGCGGTG
TCGATCATGG CGGCGGCGAG CATTGCCGGA CGGCTTATCG GCGGATCGCT GCTTTCGCGT
GTTGCATCAA AGACTTATCT CTTCGCGATC TATGTGCTGC AGGGCATTTC CTTTGCGCTG
TTCGCGTTTG CCGAAGGCGT GGCTGCCCTC TTCATCGTCT CGGCGATGTT TGGCGCGACG
GTCGGAAATA TGCAGATGAT GCAACCACTT ATCACGGCGG AAGCATTCGG ATTGAAAGCC
TATGCGCGTA TCCTCTCGGT ATCGCAGATG ATTACGACCT GCGCGAACGC GGCAGGCCCT
GCGCTGCTCG GGTTTTTGTA TGTAGCTGCA GGGGGTTACG AGACGGCCTA TCTCGCGATA
ACCGTGTCAT CGGTGCTCGG TTTTGCATGC CTTGCCGCGG CGGGGCCGGT GCGGGCTCTG
ATCGACGCTC AAGAAAAATC CCTACGCGAT TGA
|
|---|
| Protein sequence | MDAGPEPEDP RASPRGGLFY GWYIVGTVFV IHTVSCGLIF YNLSIFLKAF VVEGGFSVSA
TSNATALFFI SSGIAGLGVG WLLDRYDPRW VVTFGAFLSA GVLAGAGHVD ELWQLYGFYI
LFGIGNAAVA VIPGMTIVAR WFTRQRSKAI AYASTGLSLG GIVFTPISAT LVESYGLGEA
AYWLAFTLVL GVVPVALIML RKSPESIGLS PDGDPPRLAA DGSRLPPDGV SFNDAIRSRF
FIFCTAAFVF SMMAQVGSLA HQFRLVATRT GDDHVAALAV SIMAAASIAG RLIGGSLLSR
VASKTYLFAI YVLQGISFAL FAFAEGVAAL FIVSAMFGAT VGNMQMMQPL ITAEAFGLKA
YARILSVSQM ITTCANAAGP ALLGFLYVAA GGYETAYLAI TVSSVLGFAC LAAAGPVRAL
IDAQEKSLRD
|
|---|
| |