| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3093 |
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| Symbol | |
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| ID | 5456927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3304552 |
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| End bp | 3306474 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640878682 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001414357 |
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| Protein GI | 154253533 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.311181 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACCGG GATTCTTTGA AGAATCGACT GTTTTGCTTA ACTTTGTTGC CCTGGCGACA
GTTTTTGCCG CTCGCGCCGA TGAGAGATCG CCTGTCTTGC GCATTAACCA GCATATCATT
CGTTTCGGAC GGCTGGCGCT CGGCGCCATG TGTCTGCTTT TCATGCTCGT CCCGGCAAGT
GCGGCGCCGC CCTCTCCCGG CCCGCGCCAC GCCATCGCCA TGCATGGCGA GCCACTCTAC
CCGGAAGGCT TCACCCATTT CGGCTATGCG AACCCGGAGG CGCCGAAAGG CGGCGCCATC
GTCTATGGCG CAACCGGCTC ATTCGACAGC CTGAACCCCT TCATCGTCCG CGGCACATCC
GCCATCGGAC TTCGGGAGCA TGTCTTCGAA AGCCTGCTTG CACGCGGCTA TGACGAGCCC
TTCACGCTTT ACGGACTGCT GGCTGAAACC GTCGAGGTGC CAGAGGACCG GAGCTGGGTG
GCCTTCACGC TGAACCCGGC GGCACGCTTC TCCGACGGCG TGCCGGTGAG CGTCGACGAC
GTGATCTATT CGCTCGAAAT GCTCCGCGAC AAGGGACGGC CCAACTACAA GACCTATTAC
TCGAAAGTCG AACGTATCGA GCGCATCGGC AAGCGCGGCG TGAAGTTTCA CTTCATCCCC
GATGGCGACC GGGAAATTCC ACTTATCCTC GGCCTGATGC CCATCATCCC CAAGCATGTC
TACGAGAAAC GGGACTTCAG CCGCGCCGGC TTCGAGACAC CCATCGGCAG CGGGCCTTAT
GTCGTGGAGA AAATGCGCCC CGGCGCCAGC ATCACCTACA AGCGCGATAC CACTTATTGG
GGCGAGTGGT TGCCGGTGAA TGTAGGCCAG AACAATATCG ACCGCATCAC CTATGAATAT
TTCCGCGATG CCAATGCCTC TTTCGAAGCG TTCAAGAGCG GCATCTATCA AGCGCGGCCG
GAGGACGACC CCGGACGCTG GAACACAAGC TATGACTTTC CGGCACTGCG CGAGGGAAAG
GTCCGGAAGG AAACCTTCGA GAGCGGGATG CCCTCGGGCA TGTATGCGCT GGTTTTCAAC
ACGCGCCGGG CCCCCTTCAC GGATATTCGC GTCCGGCAGG CACTGATCCA GCTGTTCAAC
TTCGAATGGG TGAACCGCAA TCTCCATTAC GGCTCCTATG TCCGTACGCA GAGTTTCTTC
GATAATTCGG AACTGGGCTC TCACGGACGC GAAGCGAGCG AGCGCGAACG CTCGCTGCTG
GCGCCCTTCG CAGGCGCCGT AGCGCCGGAC ATCATGGCGC GGGGCTGGCA GGCGCCGAAG
GGCGATCCTT CCGGACAGGA CCGGGCGAAC CGCGCCCGCG CGACGGCGCT GCTGAAGGAC
GCCGGTTACG AGGTCCGCCG GGGGATCATG ACGCAGAAAG AAACGGGACG GCCTCTGGCG
TTTGAAATTC TGGTAGCGAC GCCGGGCGAG GAACGCCTCG CCCTCACTTA TTCGCGGATG
GTGAAGCGCA TCGGCGTCAA TGCCATCGTC CGCAATGTCG ACCCGAGCCA ATATCAGGAA
CGGCGCAACA ATTACGACTT CGACACGATC TTCAACAGCT GGTTCTCATC TCTCTCGCCC
GGTAACGAAC AGAGTTTCTA TTGGGGTTCC GAGGCGGCGG ACCAGCCGGG CACGCGCAAC
TACATGGGCG CGAAGGAACC GGCCATCGAT GCGATGATCG ATGCGATGCT TGTGGCGCGG
ACGCGCGAGG AATTCGTGGC TGTGGTGCGC GCCATGGACC GCGTGCTGCT GTCGGGCGCC
TACATGATCC CGCTTTATCA CCAGCCGGAA CAATGGGTCG CGCTGTGGAA GAAGGTGAAG
ACGCCGGAGA CGAGATCGCT CTACGGCTAT CGGAGCAGCA CCTGGTGGAT CGACCAAGAC
TAG
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| Protein sequence | MAPGFFEEST VLLNFVALAT VFAARADERS PVLRINQHII RFGRLALGAM CLLFMLVPAS
AAPPSPGPRH AIAMHGEPLY PEGFTHFGYA NPEAPKGGAI VYGATGSFDS LNPFIVRGTS
AIGLREHVFE SLLARGYDEP FTLYGLLAET VEVPEDRSWV AFTLNPAARF SDGVPVSVDD
VIYSLEMLRD KGRPNYKTYY SKVERIERIG KRGVKFHFIP DGDREIPLIL GLMPIIPKHV
YEKRDFSRAG FETPIGSGPY VVEKMRPGAS ITYKRDTTYW GEWLPVNVGQ NNIDRITYEY
FRDANASFEA FKSGIYQARP EDDPGRWNTS YDFPALREGK VRKETFESGM PSGMYALVFN
TRRAPFTDIR VRQALIQLFN FEWVNRNLHY GSYVRTQSFF DNSELGSHGR EASERERSLL
APFAGAVAPD IMARGWQAPK GDPSGQDRAN RARATALLKD AGYEVRRGIM TQKETGRPLA
FEILVATPGE ERLALTYSRM VKRIGVNAIV RNVDPSQYQE RRNNYDFDTI FNSWFSSLSP
GNEQSFYWGS EAADQPGTRN YMGAKEPAID AMIDAMLVAR TREEFVAVVR AMDRVLLSGA
YMIPLYHQPE QWVALWKKVK TPETRSLYGY RSSTWWIDQD
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