| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3085 |
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| Symbol | |
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| ID | 5454281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3294976 |
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| End bp | 3296430 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640878674 |
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| Product | sodium/proline symporter |
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| Protein accession | YP_001414349 |
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| Protein GI | 154253525 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.678112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.198592 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGTCA CCGCCGTCAC AATCATCCTC TATCTCCTCG CCATGCTCGC TCTCGGCGTG
GCCGCCTATC GCTTTACCCG CAACCTCAAG GATTACATCC TCGGCGGCCG CCAGCTCGGC
GGCGCCGTCG CGGCGCTTTC GGCGGGCGCC AGCGACATGA GCGGCTGGCT GATGCTCGGC
CTGCCGGGCG CGATCTACGC CTCCGGCCTC AATCAGATCT GGATCGCGGT CGGCCTTGTC
GCGGGCGCGC TTCTCAATTG GCGCTTTATT GCGCGCCGCC TGCGGCGTTA TACCGAGCGG
GCTGGCGATG CGCTCACGAT ACCGGATTAC TTCGAAAACC GTTTCGCCGA TAGAAGCCGC
GTCCTCCGCG TTGCCAGCGC ATTCGTCATT CTCATCTTCT TCACGATCTA CACCTCTGCC
GGGCTTGTCT CCGGCGCCAT TCTTTTTGAA CAGGTTTTCG GCCTCGACTA CCGGATCGCG
CTTCTCGTCG GCACCGTCAG CATCCTCTCC TACACGGCGA TCGGCGGCTT CCTCGGCGTC
TGCTGGACGG ACACGGTGCA GGGCGTGATG ATGTTCCTCG CCTTGCTCAT CGTGCCCGCC
GTCGCCATCA CGAGCATGGG CGGCTGGGGC GCCACCATGA CGGCAACATC CGCCGTCGCT
CCCGCAGGCG TTTTCGATGC CTTTCACGAT ACGGGTGTAA TCGGCGCCGT CTCCTTGATG
GCGTGGGGCC TTGGCTATTT CGGTCAGCCG CACACCCTCG CGCGTTTCAT GGCGCTTCGC
GACGAGCGCG ATATGCCCGC GGCGCAGATG ATCGGCATGA CATGGATGGT GCTGGCGCTT
TACGGTGCGA TTGCGACGGG GCTTGCCGGC ATCGGCTATT TCGCCGCCGC GCCGCTCGAC
AATCCGGAAA CGGTTTTCCT CTCTCTTTCC CAGTCGCTCT TCAATCCGTG GATAGCAGGT
ATTCTCCTCG CCGCCGTGCT CGCCGCTATC ATGAGCACGG TCTCTTCGCA GCTGCTGGTT
TCGTCGAGCG TCATCGCAGA AGATTTCTGG AAGCGGTTGT TGCGGCCGCA AGCGGAAGCA
GGGGAGTTGC TGAATATCGG CCGCGGCTCC GTCTTTGTCA TTTCGATCGC CGCCTTCCTG
CTGGCACTCG ACCGCGACAG CAGCGTGCTT TCCCTTGTCG CCTATGCCTG GGCAGGCTTT
GGCGCTGCCT TCGGGCCGGT CGTCGTGCTC TCGCTCTTCT GGCGGCGCAT GACGCGTGAC
GGCGCGCTGG CCGGCATGGT CGTCGGCGCG GTAACTGTCA TCGTCTGGAA ACAGTTCTCG
GGCGGCATAT TCGAAATCTA CGAAATTCTT CCCGGTTTCA TTTTCGCGAG CATCGCCATT
GCCGGCGTCA GTCTTCTCGG CCGCGCGCCG GGGCCCGAGG TCGTGGATTT ACATGATTCC
GTGGCCGCAG GCTGA
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| Protein sequence | MEVTAVTIIL YLLAMLALGV AAYRFTRNLK DYILGGRQLG GAVAALSAGA SDMSGWLMLG
LPGAIYASGL NQIWIAVGLV AGALLNWRFI ARRLRRYTER AGDALTIPDY FENRFADRSR
VLRVASAFVI LIFFTIYTSA GLVSGAILFE QVFGLDYRIA LLVGTVSILS YTAIGGFLGV
CWTDTVQGVM MFLALLIVPA VAITSMGGWG ATMTATSAVA PAGVFDAFHD TGVIGAVSLM
AWGLGYFGQP HTLARFMALR DERDMPAAQM IGMTWMVLAL YGAIATGLAG IGYFAAAPLD
NPETVFLSLS QSLFNPWIAG ILLAAVLAAI MSTVSSQLLV SSSVIAEDFW KRLLRPQAEA
GELLNIGRGS VFVISIAAFL LALDRDSSVL SLVAYAWAGF GAAFGPVVVL SLFWRRMTRD
GALAGMVVGA VTVIVWKQFS GGIFEIYEIL PGFIFASIAI AGVSLLGRAP GPEVVDLHDS
VAAG
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