| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3079 |
|---|
| Symbol | |
|---|
| ID | 5455428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3286872 |
|---|
| End bp | 3288956 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640878668 |
|---|
| Product | ATP-dependent DNA helicase RecG |
|---|
| Protein accession | YP_001414343 |
|---|
| Protein GI | 154253519 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1200] RecG-like helicase |
|---|
| TIGRFAM ID | [TIGR00643] ATP-dependent DNA helicase RecG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.187564 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCCTG AAATCCTTTT CCCGCTTTTC GCGCCGGCAC GCTCGCTGCC GGGCATCGGG
CCGCGCCTGG AAGCACTGGT TGAGAAGCTC GCCGGTCCAA AGGTCATAGA TATTCTCTGG
CACCTGCCCT CAGGCCTTAT CGACCGCCGG CACCGTCCCT CGATTGCCGA TGTGCGCGAC
GGGGAGATAG CTACCATGGA GGTAACGGTA GGCCTGCATA TTCCGCCAAG AACGAAGCGT
CTGCCCTACC GGGTGCATGT CTTCGACGAT ACCGGCGAAA TGCAGATCGT TTTCTTCAAC
GCACGTGCGG AGCATCTCGC CAAGATATTG CCGGAGGGCC AACGCCGCAT CATTTCCGGC
CGCGTGGAGT TCTATCAAGG TACGCCACAG ATGACGCATC CCGACCACAT GATCGGGCTC
GACGAGTTGG CGGATCTTCC GCTCATGGAA CCCATATATC CACTCACGGC AGGCCTGCCG
CTCAAATCCA TCCAGAAGGC TGTTCGCGGC GCGCTGCCGC GGCTGCCGGA ACTGCCCGAA
TGGCAGGACG GACCGTGGCT CAAGGCACGC GGATGGACCA ACTGGCGGCA ATCGCTGATC
GCCGCTCATG AGCTGCAATC TGCCGCCGAT CTCGGCGCTG ACGCCCCCGC ACGGGCGCGC
CTCGCTTATG ATGAATTGCT CGCGAACCAG CTCGCGCTTG GCCTTGTCAG GCTGAGGATG
CGCCGTCTGC CCGGCCGATC CATTTCCGCA CCGGGGCAGC TGAGGAAAAA GGTCGAGGCT
GCCCTGCCCT TTGCGCTCAC AAATGCGCAG ATACGGGCGC TTTCGGAAAT CTCCGCCGAT
ATGAAAAGCA ATCACCGTAT GTTGCGATTG TTGCAAGGCG ATGTCGGTAG CGGCAAAACC
GTCGTCGCGC TTCTCGCCAT GCTCGATGCC GTGGAAGCAG GATTTCAGGC CGCCATGATG
GCCCCCACGG AAATTCTCGC GCGCCAGCAT TATGCAACAT TGGCGCCTCT TTGCGACGCA
GCGGGCGTGC GGCTCGAACT CCTGACGGGG CGGGAGAAAG GCAAGCGGAG GGAAGAAATC
CTCGCGAGGG CTGCCGCCGG CGAGATCGAC ATACTCGTGG GCACGCATGC GTTGTTTCAG
GAAGACGTCG CCTTCCGCGC CTTGGCATTT GCCGTCGTGG ATGAACAGCA CCGCTTCGGT
GTGCATCAGC GCCTCATGCT GACTTCCAAG GGAGGAACCG GGACGGATGT GCTGGTAATG
ACCGCAACGC CGATCCCGCG AACACTGACG CTGACGGCCT ACGGGGACAT GGACGTCTCG
AAGCTCGATG AAAAACCGCC TGGACGGAAG CCCGTCGACA CGCGGGCCTT GCCGCTGGAT
CGGTTGGGTG AGGTGGCTGC GGGGCTCGAC CGGGCATTGG CGCGGGGCGA CCAGATCTAT
TGGGTCTGCC CACTTGTGGA AGAGTCGGAC GAGGTCGATG CCGCTGCAGC AGAAGAACGG
CACCGGCATC TGCAGTCGAT CTATGGGGAG AAGGTCGGCC TTGTACATGG CCGGATGAAA
GCCGCCGACA AGGACGCCGT GATGGCGCGC TTCCAGGCGG GAGATATCCG TATCCTCGTT
GCCACCACCG TCATTGAAGT CGGCGTGAAT GTGCCGACGG CGACTGTCAT GGTAATCGAG
CATGCCGAAC GGTTCGGCCT CGCACAACTG CATCAGCTGC GCGGGCGTGT CGGACGCGGC
GGCGACAAAT CAAGCTGCCT GCTCCTCTAC CAGGCTCCCT TGGGGGAGAC CGCGGCGGCG
CGGATCAAGA TCATGCGGGA AACCGAAGAC GGTTTCCGCA TCGCCGAGGA AGATTTGCGG
TTGCGCGGCG CAGGCGAGCT GCTCGGCACT CGCCAGAGCG GCCTGCCGGA ATTTCGCCTG
GCCAATATAG AGACGCAGCA GGAATTGCTG GCGGTTGCCT ATGACGATGC CCGGCTCATT
CTCGATCGCG ACCCGGAACT TGAAAGCCCG AGAGGAGAAG CGCTGCGCAC GCTCCTCTAT
TTGTTCGAGC GCGACGAAGC GATCCGCTAC CTACGTTCGG GGTGA
|
|---|
| Protein sequence | MRPEILFPLF APARSLPGIG PRLEALVEKL AGPKVIDILW HLPSGLIDRR HRPSIADVRD
GEIATMEVTV GLHIPPRTKR LPYRVHVFDD TGEMQIVFFN ARAEHLAKIL PEGQRRIISG
RVEFYQGTPQ MTHPDHMIGL DELADLPLME PIYPLTAGLP LKSIQKAVRG ALPRLPELPE
WQDGPWLKAR GWTNWRQSLI AAHELQSAAD LGADAPARAR LAYDELLANQ LALGLVRLRM
RRLPGRSISA PGQLRKKVEA ALPFALTNAQ IRALSEISAD MKSNHRMLRL LQGDVGSGKT
VVALLAMLDA VEAGFQAAMM APTEILARQH YATLAPLCDA AGVRLELLTG REKGKRREEI
LARAAAGEID ILVGTHALFQ EDVAFRALAF AVVDEQHRFG VHQRLMLTSK GGTGTDVLVM
TATPIPRTLT LTAYGDMDVS KLDEKPPGRK PVDTRALPLD RLGEVAAGLD RALARGDQIY
WVCPLVEESD EVDAAAAEER HRHLQSIYGE KVGLVHGRMK AADKDAVMAR FQAGDIRILV
ATTVIEVGVN VPTATVMVIE HAERFGLAQL HQLRGRVGRG GDKSSCLLLY QAPLGETAAA
RIKIMRETED GFRIAEEDLR LRGAGELLGT RQSGLPEFRL ANIETQQELL AVAYDDARLI
LDRDPELESP RGEALRTLLY LFERDEAIRY LRSG
|
|---|
| |