| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3036 |
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| Symbol | secD |
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| ID | 5455963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3236166 |
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| End bp | 3237773 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640878624 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001414300 |
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| Protein GI | 154253476 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCATT TCGATCGCTG GAAGGTCGCT CTGATACTTC TGGTCTGTTT CGCGGGCCTC
GCCTATTCGG CGCCGAATTT CATTCCGAAG GCCTCGCTTC AGGGCGTTCC GGAATGGTTG
CCCCACCAGC AGATCAATCT CGGGCTCGAC CTGCGAGGCG GGTCCTATCT GCTCCTTGCC
GTCGATACCG CATCGATTGT CCGAGACCGG CAGCAAAGCC TCGTGAACGA TGTGCGAAAT
GCGCTTCGCA GCGAGCGTAT CCCTTATACC GGGCTTGGCC TGCAAGGGGA GGGCGTCAGC
GTCCGCATCA CCAACCCGGA AGATGTTGAA AAGGCGAGGG AAGCAATCGA GGGTCTGTCC
ACCATCGTTT CCGGCAACGC GTTCTCGACA TTGCCGGAGC GGGATCTGGC TATCGTTACG
ACCGAACGTC AAATCACTGT GGCACTGACC GAGGCAGAAA AAATCGCGCG GACTCAATCG
GCGGTGCAAC AGTCGATCGA GATCGTCCGC CGCCGTATCG ATGAACTCGG CACCACCGAG
CCGGTGATCC AGCAGCAGGG CACGGATCGG ATCCTCGTTC AGGTTCCGGG CCTTGACGAT
CCGCAGCGCC TGAAGGAACT GCTCGGCCAG ACAGCGAAAA TGAATTTCCG GCTGGTGAGC
AACGCCATGT CGGGCCAGCA GGCTCTGGCC AGCCGGACCG TTCCATCAGG AACTGAAATT
CTCTATACGG CGGATGAGCC GCGCGCGCCG GTGCTGGTCG AGAGGCGGAT TATGGTGGGC
GGCGACCGTC TCGTCGACGC ACAACCGGGC TTCGATCAGC GCAACGGACA GCCTGTGGTC
AATTTCCGCT TCGATTCTTC GGGAGCACGC CAGTTCGGCG AGGTCACTCG CAACAATGTC
GGCCGTCCTT TCGCCATCGT ACTCGACGAC AAGGTTATCA GCGCGCCGCG CATCAATGAA
CCGATCATGG GTGGCTCCGG CCAGATCAGC GGCAGTTTCA CGGTGCAGGC GGCGAACGAT
CTCGCCATTT TGCTGCGTGC CGGCGCTCTG CCTGCGCCCC TCAACGTGCT TGAAGAGCGG
ACAGTCGGTC CGGGTCTCGG CGCGGACTCC ATTCGCGCGG GTGAAATTGC GGCCGTTATA
GGTTCCGTCG CCGTCGTCGT CTTCATGATC GCGAGCTACG GCTTCTTCGG CCTGCTGGCG
AATATCGCGC TCTTCCTCAA CGTCGCGATG ATTTTCGCCG CCCTCTCGAT TCTTCAGGCG
ACTCTGACGC TGCCGGGTAT CGCGGGCATT GTGCTGACGA TCGGCATGGC AGTGGACGCG
AACGTGCTCA TCTATGAGCG CATAAGGGAA GAAATAGCAG CGGGGAAGGG GCCGATACCG
GCCATCGAGG CTGGCTACAA TCGAGCTCTC TCATCCATTC TCGATGCGAA CATCACCACG
CTTATTTCCG CGGCAATCCT CTTCCAGATG GGCTCGGGGC CTGTGCGCGG CTTCGCGGTC
ACACTCGGCA TAGGCATTAT CACCTCGGTC TTTACTGCCT TCACCGTAAA CCGTCTCATG
GTGTCGGTGT GGCTGCGCCG CCGCCGTCCG AAGACGCTGT ATCTGTGA
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| Protein sequence | MLHFDRWKVA LILLVCFAGL AYSAPNFIPK ASLQGVPEWL PHQQINLGLD LRGGSYLLLA
VDTASIVRDR QQSLVNDVRN ALRSERIPYT GLGLQGEGVS VRITNPEDVE KAREAIEGLS
TIVSGNAFST LPERDLAIVT TERQITVALT EAEKIARTQS AVQQSIEIVR RRIDELGTTE
PVIQQQGTDR ILVQVPGLDD PQRLKELLGQ TAKMNFRLVS NAMSGQQALA SRTVPSGTEI
LYTADEPRAP VLVERRIMVG GDRLVDAQPG FDQRNGQPVV NFRFDSSGAR QFGEVTRNNV
GRPFAIVLDD KVISAPRINE PIMGGSGQIS GSFTVQAAND LAILLRAGAL PAPLNVLEER
TVGPGLGADS IRAGEIAAVI GSVAVVVFMI ASYGFFGLLA NIALFLNVAM IFAALSILQA
TLTLPGIAGI VLTIGMAVDA NVLIYERIRE EIAAGKGPIP AIEAGYNRAL SSILDANITT
LISAAILFQM GSGPVRGFAV TLGIGIITSV FTAFTVNRLM VSVWLRRRRP KTLYL
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