| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3015 |
|---|
| Symbol | |
|---|
| ID | 5456112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3217793 |
|---|
| End bp | 3218695 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640878603 |
|---|
| Product | AraC-like transcriptional regulator |
|---|
| Protein accession | YP_001414279 |
|---|
| Protein GI | 154253455 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.451833 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGGC TTTCCGAACT GGCTTCATTG ATTGATCGAT ACGCGCCGGA GCATGGTTCC
GCACCGACGG CGCTGCCCCG GCTTCATCTC GCCCGCATGG AGAAGCCGAC CGACCCGATG
CATATTCTCC AGGAGCCCGC GCTCTGCATC GCGGCGCAGG GCCGCAAACA GATGATCCTG
GGCGACCGCC TCTATTCCTA CGAGCCGTCG CACTACCTTC TCGTCTCGGC TGACCTCCCG
GTCGTCGGCT GCGTGATGGA GGCGAGCCCG GAGAAGCCCT ATCTCGGCAT GCGCCTCGAC
CTGTCGCCGG CGGCGCTCGC GGCCCTCATG CTCGAAATGG ATGGTAACGG AAAAGCGAGC
GACGCACCCG GCTCCGGCAT TCTCATGAGC CCGCTCACCG AACCGCTGCT CGATGCGGCG
ATCCGGCTTG TCCGTCTTCT CGATGACCCG GCCAGCGCGC CGATCCTTGC GCCGCTCATC
GAGCGCGAGA TCCATTACCG GCTCCTCATC GGCGACCAGG CGATCCGTCT CCGCCAGATC
GCGCTTGCCG ACAGCAAGTT CAATCAGGTC AACCGCGCCA TCTCCTGGAT CAAGCAGAAT
TATGCGCGGC CCTTCCGCAT CGAGACGGTC GCGGCGGAGG CGCGCATGAG CCCGTCCTCG
CTGCATGAAC ATTTCAAGGC CGTCACCGCC ATGAGCCCGC TGCAATATCA GAAGCAGATC
AGGCTGCAGG AAGCGCGCCG CCTGATCGTC GGCGAGGCCG TCGATGCGGC GACAGCCGCG
CATCGCGTCG GCTATGACAG CCCGTCGCAA TTCAGCCGCG AGTACAACCG CCTTTTCGGC
GCCCCGCCCA TCCGCGATGC CGAGCGCCTC CGCGCCGCGC CGGAAGCAAG CGCTGCAGTT
TGA
|
|---|
| Protein sequence | MDRLSELASL IDRYAPEHGS APTALPRLHL ARMEKPTDPM HILQEPALCI AAQGRKQMIL
GDRLYSYEPS HYLLVSADLP VVGCVMEASP EKPYLGMRLD LSPAALAALM LEMDGNGKAS
DAPGSGILMS PLTEPLLDAA IRLVRLLDDP ASAPILAPLI EREIHYRLLI GDQAIRLRQI
ALADSKFNQV NRAISWIKQN YARPFRIETV AAEARMSPSS LHEHFKAVTA MSPLQYQKQI
RLQEARRLIV GEAVDAATAA HRVGYDSPSQ FSREYNRLFG APPIRDAERL RAAPEASAAV
|
|---|
| |