| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3004 |
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| Symbol | |
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| ID | 5456246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3204860 |
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| End bp | 3206254 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640878592 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001414268 |
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| Protein GI | 154253444 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.599739 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGAC CCACTAAGTC CCTGAGCCGC CTCCTTTCGC TCGCCCTCGG CACGACGGCC
CTGACAGGCT TTCTTGCCGT TACGCCGGCT TCCGCCGAAA ACCTCATCGA TGCCTTGACC
GCGGCCTATG CCACCAACCC GACACTGCAG GCGCAGCGCG CCCAGTTGCG CGCCACCGAC
GAACTGGTGC CGCAGGCGCT GTCCGGCTGG CGGCCCAACC TGCAGGCGCA GGGCGCATAT
GGCGTTACCA GCACCGACAC CACGCTCAAT AACGGCGCCA GCGCGCGCGA CGATCTCCGT
CCGCTTTCCG GTTCCGTCAC GCTCAGCCAG AACCTCTTTG CGGGCGGGCG CACGGTCAAC
GCGACCGATC AGGCCGAGGC CTCGGTGCAG TCCGGCCGCG AGTCGCTGCT GAGCGTCGAG
CAGACGACGC TGCTGAATGC CGTGCAGGCC TATATGAACG TGATCCGCGA TCAGAGCGTT
CTTGAGCTCA ACCGTAACAA CGTTGAAGTG CTGAAACGCC AGCTCGATGC GACAACGGAC
CGTTTCCGTG TCGGCGAGCT CACGCGCACG GATACCGCCC AGTCGGAAGC CCGTCTCAGC
CTTGCCCGCT CCAATCTCAT CGCCGCCGAG GCGCAGCTCA CTGCGAGCCG CGCCTTCTAC
GAGCGCATCG TCGGCCAGCT TCCGGGCACG CTTGAGAAGC CGAACCGTCT CGAGGGACTG
CCGGCCACCG AGGAAGAAGC CAGGGCACTG GCCGCGCAGA ACAACCCGTC ACTGCGTGCC
GCGCGCTATT CGGAAGAAGC GAGCCGTGAG GCGATCAAGG TTGCCAAAGG TGCGCTGCTG
CCGAGCTTCG ACGTTCAGGC CCAATACCAA TATGGCCGTG ATCCCTCGTC CACGATCCGC
GATGTCGAGG AAAGCTCGCT GCTCGGCGTG CTGACCATCC CGCTCTACCA GAGCGGCGTC
GAGTATTCGC GGGTCCGCGA GGCGAAGGAA ATCAACAATC AGAGCCGCCT CCAGATCTAT
GCCGTGCAGC GCCAGGTCGA TGAAGCGGTG CGGAATGCCT GGGAGCAGCT TCGCGCCAGC
CGCGCCAGCA TCACTTCCAC CTCCGAGCAG GCCAATGCGA GCAATATCGC GCTGGAAGGC
GTGCGGCAGG AATCCGAAGT GGGCGCCCGC ACCACGCTCG ACGTGCTCGA TGCGGAGCAG
GAATTCCTGA ATGCGCGCGT TGCGCTGGTC AGTGCCGAGC GCGATCTGGC GGTCGCCGAA
TATGGGCTTC TCGCCGCGAT GGGCCAGTTG ACGGCGCGCA ATCTTGAATT GCCGGTCGAG
TATTACGATC CCGAAGCGAA TTATGGCGAG GTCCGCAACA AGTGGATCGG CTTCGGTACC
GCCAGCGGCG AATAG
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| Protein sequence | MKRPTKSLSR LLSLALGTTA LTGFLAVTPA SAENLIDALT AAYATNPTLQ AQRAQLRATD
ELVPQALSGW RPNLQAQGAY GVTSTDTTLN NGASARDDLR PLSGSVTLSQ NLFAGGRTVN
ATDQAEASVQ SGRESLLSVE QTTLLNAVQA YMNVIRDQSV LELNRNNVEV LKRQLDATTD
RFRVGELTRT DTAQSEARLS LARSNLIAAE AQLTASRAFY ERIVGQLPGT LEKPNRLEGL
PATEEEARAL AAQNNPSLRA ARYSEEASRE AIKVAKGALL PSFDVQAQYQ YGRDPSSTIR
DVEESSLLGV LTIPLYQSGV EYSRVREAKE INNQSRLQIY AVQRQVDEAV RNAWEQLRAS
RASITSTSEQ ANASNIALEG VRQESEVGAR TTLDVLDAEQ EFLNARVALV SAERDLAVAE
YGLLAAMGQL TARNLELPVE YYDPEANYGE VRNKWIGFGT ASGE
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