Gene Plav_3003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3003 
Symbol 
ID5456247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3204050 
End bp3204712 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content64% 
IMG OID640878591 
Productprotein-L-isoaspartate(D-aspartate) O-methyltransferase 
Protein accessionYP_001414267 
Protein GI154253443 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2518] Protein-L-isoaspartate carboxylmethyltransferase 
TIGRFAM ID[TIGR00080] protein-L-isoaspartate(D-aspartate) O-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value0.704493 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACT TTGCCGCCGC CCGTCACAAC ATGGTCGAAA GCCAGGTGCG CATCAATTCG 
GTGACGGACC GGCGCGTGAT CGACGCCCTG TCGGCGATCC CGCGCGAGCG TTTCGTTCCG
CAATCGAGCC AGGGCATCGC CTATATGGAC GAGGACGTCC GTATCGCCGG CGGCAAGCCG
CCGCGTTTCC TGATGGAACC GCGTGTTTTC GCGAAGATGG TGCAGCTCGC GGAAATCGGC
CCGGAAGACC TGGTGCTCGA TGTCGGCTGC GGCACGGGCT ATTCGACGGC GGTTCTCGCG
CGCCTTGCCG GTACTGTCGT CGCTCTCGAA TGCGACGAAA ACCTCGCCGC CAGTGCTGGC
GCCACGCTGT CCGATCTCGG TGTCGACAAT GCGGCGGTCC TGCCCGGTGC GCTTACGGAA
GGTTGCGCGA AGCAGGCGCC CTACGATGTC ATCTTCATCA ACGGCATGAT CGGTTCGGTG
CCGGATGCAT TGCAGAACCA GCTGCGCGAC GGGGGCCGTC TCGTTGCCGT TGTCGGCGAC
GGCATTTCCG GCCGCGCTCG GCTCTATGTC CGCTCGGGCG AAACCTTCAG CGGACGCGAT
GCCTTCGACG CCAATATCGG CTTCCTGCCC GGGTTCGAGC CGGTCGAGAG CTTTGTTTTC
TGA
 
Protein sequence
MTDFAAARHN MVESQVRINS VTDRRVIDAL SAIPRERFVP QSSQGIAYMD EDVRIAGGKP 
PRFLMEPRVF AKMVQLAEIG PEDLVLDVGC GTGYSTAVLA RLAGTVVALE CDENLAASAG
ATLSDLGVDN AAVLPGALTE GCAKQAPYDV IFINGMIGSV PDALQNQLRD GGRLVAVVGD
GISGRARLYV RSGETFSGRD AFDANIGFLP GFEPVESFVF