| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2987 |
|---|
| Symbol | |
|---|
| ID | 5456446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3184267 |
|---|
| End bp | 3185040 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640878573 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001414251 |
|---|
| Protein GI | 154253427 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.715624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.638101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGACG CTGACGGAAA ACGCCTCAAG GTCTCGGACA AGATGATGAT CGAGATAAAG
GGCGTGAACA AATGGTTCGG CGACTTTCAC GTGCTGAAGG ATGTCGACCT CACGGTGAAG
GAGGGCGAGC GTATCGTTAT TGCGGGGCCA TCGGGTTCGG GCAAGTCGAC GTTGATCCGC
TGCATCAACC ATCTGGAGCC GCATGACGAG GGAAGCATCA TTATCGACGG AGTGGAGCTG
ACCGAGGATC TGAAACGCAT CGACGAGGTT CGGCGCGAGG TTGGCATGGT TTTCCAGCAA
TTCAATCTGT TTCCCCACAT GACGGTGTTG GAGAATTGCA CGCTGGCGCC ACTCTGGGTG
CGCAAGATGC CGGAGAAGGA CGCTCGCGAT CTTGCCATGA AATTTCTGGA GCGTGTCCGC
ATTCCCGAAC AGGCGAACAA ATATCCGGGG CAGCTCTCGG GCGGTCAGCA GCAGCGCGTG
GCGATTGCCC GGGCGCTCTG CATGAACCCA AAGATCATGC TGTTCGACGA ACCGACCTCC
GCGCTCGATC CTGAAATGAT CAAGGAAGTG CTCGATGTGA TGGTCGAGCT CGCGCAGGAG
GGCATGACCA TGCTCTGCGT GACGCATGAG ATGGGTTTCG CACGGGAGGT GGCGAATCGG
GTCGTCTTCA TGGACGAGGG AGAGATCATC GAGGAAGCGC CGCCGGAGGA ATTCTTCAGG
GCCCCGAAAA ATGCGCGGAC AAAGGAATTT CTCGCTCAGA TACTGGCGCA CTGA
|
|---|
| Protein sequence | MSDADGKRLK VSDKMMIEIK GVNKWFGDFH VLKDVDLTVK EGERIVIAGP SGSGKSTLIR
CINHLEPHDE GSIIIDGVEL TEDLKRIDEV RREVGMVFQQ FNLFPHMTVL ENCTLAPLWV
RKMPEKDARD LAMKFLERVR IPEQANKYPG QLSGGQQQRV AIARALCMNP KIMLFDEPTS
ALDPEMIKEV LDVMVELAQE GMTMLCVTHE MGFAREVANR VVFMDEGEII EEAPPEEFFR
APKNARTKEF LAQILAH
|
|---|
| |