| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2985 |
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| Symbol | |
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| ID | 5456418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3181941 |
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| End bp | 3183143 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640878571 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001414249 |
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| Protein GI | 154253425 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.570925 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATGG GGGCGGAACG GACCAAGCGG CGTGGACAGG GGGGCAAGGT GCCCTTCGGC
TGGAACAATC CGCGTGTGCG TTCCTTCGTC TATCAAGCCG CCGTGCTCGG CTCGGTCATT
GCGATCGTTT GGTTCTTCAC AACGACGGCG CAGGAAAACC TCGCGCGGCT CAACATTTCT
TCCGGCCTCG GCTTTCTCGA CACCACGGCG GGGTTTGGCA TCATCCAGAC GCTGATCCCC
TATACCGAAC AGTCAAGCTA TGGCCGGGCT TTCCTCGTCG GTCTGTTGAA TACGTTGGTC
GTGGCCGTGA TCGGCATTGT GCTGTCTGTA ATGCTCGGCT TCTTTATCGG CGTGATGCGG
CTGTCACGGA ACTGGCTGAT CGCGAAGATA GCGGCCGGCT ATGTCGAGAT CATGCGGAAC
ATTCCGCTGC TGCTGCATCT CTTCTTCTGG TATTTCGCGG TGCTCCGCCC CTTGCCCGGC
CCAGCAGAGA GCATTTCGCC CTTGCCAGGC GTCTTCATCA ATAATCGCGG GCTCATTCTG
CCGGAGCCAA TTTTTGGTGC GACGGCGAGC GCCTTCTTTA TTGCCATTGC GGTGGCGCTT
GCTGCGGGTT TCCTTCTCAT TCGATGGGCG CGAAAGCGGC AAGTTGCGAC CGGGCAGTTG
TTTCCCGCAT GGCGAACCGC AGTGGCGCTG CTCGTTGTTC TGCCGGGCCT TGTCTGGCTC
GTTGCGGGCG CACCATTCGA ACTCGCATTC GCCAGGCATG CAGGTTTCGA TTTCGACGGG
GGAATGCGGC TGCTGCCGGA ATTCGTGGCG CTGGTCCTCG GCCTCACGCT TTATACGGCG
GGTTTTATCG CGGAGATTGT AAGGGCAGGC ATTCTTTCAG TCAGCAAAGG TCAGAGAGAA
GCGGCGGCGG CGCTCGGTCT GAAAGACAGC ACGACGTTGC GTCTCGTCGT TATTCCGCAG
GCACTTCGGC TCATCATTCC GCCGCTGACG AGCCAGATCC TGAATCTCAC AAAAAACTCC
TCACTTGCTG TCGCAATCGC CTATCCCGAT CTCGTGGCGG TATTCGCGGG CACAGTGCTG
AACCAGACGG GGCAGGCGAT CGAAGTGATC GCACTCACCA TGGCCGTTTA TCTCACGCTC
AGTCTCATCA CCTCCTTGTT GATGAACTGG TACAATGCGC ATATTGCGCT GAAAGAGCGG
TGA
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| Protein sequence | MSMGAERTKR RGQGGKVPFG WNNPRVRSFV YQAAVLGSVI AIVWFFTTTA QENLARLNIS
SGLGFLDTTA GFGIIQTLIP YTEQSSYGRA FLVGLLNTLV VAVIGIVLSV MLGFFIGVMR
LSRNWLIAKI AAGYVEIMRN IPLLLHLFFW YFAVLRPLPG PAESISPLPG VFINNRGLIL
PEPIFGATAS AFFIAIAVAL AAGFLLIRWA RKRQVATGQL FPAWRTAVAL LVVLPGLVWL
VAGAPFELAF ARHAGFDFDG GMRLLPEFVA LVLGLTLYTA GFIAEIVRAG ILSVSKGQRE
AAAALGLKDS TTLRLVVIPQ ALRLIIPPLT SQILNLTKNS SLAVAIAYPD LVAVFAGTVL
NQTGQAIEVI ALTMAVYLTL SLITSLLMNW YNAHIALKER
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