| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2954 |
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| Symbol | |
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| ID | 5456733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3151901 |
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| End bp | 3153550 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640878538 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001414218 |
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| Protein GI | 154253394 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.0067439 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTCGGCGG GACGGCAAGG TCAAGAACAA GAGGAAGCGG ACGTGGCGGG AGAGAAGAGC
GAATGGTGGA AGGGCGCGGT GGTCTATCAG ATCTATCCGC GCAGTTTTCA CGATACAAAT
GGCGACGGCA TCGGCGACCT GAAAGGCATC GAGGAAAAGC TCGACCATGT GGCGGGGCTG
GGGGCGGACG CGATCTGGCT GTCGCCGATC TATCCCTCGC CCAATCGCGA TTTCGGCTAC
GACGTTTCCG ACTATTGCGC GATTGCGCCC GAGATGGGCT CGATGGCGGA TTTCGACCGG
CTGGTCGAGG CGGTGCATGG GCGGGGCATG AAGCTCATTC TCGACCAGGT GCTTGCGCAT
ACATCCGAGC AGCATCAGTG GTTTCAGGAG AGCCAGCTCT CCGCCGACAA CCCGAAATCG
GACTGGTATG TCTGGGCGGA TGCGAAGGAA GACGGGACGG TGCCGAACAA CTGGCTGTCG
GCATTCGGCG GTCCGGCCTG GTCGTGGAAT CCGGTCAGGC GGAAGTACTA CCATCACAAG
TTTCTGAAGA GCCAGCCAAA ACTCAACTTC CACAATGAGC AGGTGGTGGA TGCTTGCATG
GATGTGCTGC GCTTCTGGCT CGACCGGGGC GTGGACGGGT TCCGGCTCGA TGTGGCGAAT
GCCTATCTGC ACGATGCGGC GCTGACCGAC AATCCGCCGC TGCCGATGGA CAAGCGCACA
TTCATGGACT GGGCGCATGC ACCGCGGCTG CAGCAGCATA TCCATGACGC GAACATGCCC
GAGAACGAAT GGGCGATGAA GCGCGTGCGG AAGGTGATGG ACGAGTATGA GGAGCGGCTG
GCCTTTGGCG AGTTTTCCGA GCGGCCCGAG ATGTTCGGGC GTTATGCGGG CGGTGTCGAA
CGGTTGCATA CGGGGTATAC GTTCGATTTT CTGGAGGACT GGAGTTTCGA GCCGCCGGTG
TTCCGCGCCT ATTACGAGAA GCTGCTGGCG CCGCTCAGCG ATCTTTTTCC CTGCGTGACG
TTTTCGAACC ACGACATCGT GCGGCCGGTG ACGCGGTGGG GCGGCGGACA AGGCGATGAC
GGGCTTGCGA AGCTGGCGCT GACGCTGCTC GTGGCGTTGC GCGGCACGGT GCTGATGTTC
CAGGGCGAGG AGCTGGGACT GCCGGAGGTG GACCTTGAGC GGAAATACAT CAAGGACCCG
GTGGGCGATC TCTATTTCCC GTGGGTGAAG GGGCGTGACG GCTGCCGGAC GCCGATGCCG
TGGGAGAGCG GCGGGGCGGA GGCAGGCTTC ACCATCGGTA CGCCCTGGCT GCCGATACCG
GATTATCACC GAATGCGGGC GGTGGATGTT CAGCAGGCGG ATGAAGGCTC CGTACTGGCG
CATGCGAAGA AGGTTATCGC GCTGAGGAAG GCGCATCCGG CGCTGAAGAC GGGCGCGATG
TCGTGTCTCG ACGCTGAGGG GAAGGTGCTC GCCTTCACAC GCGAGGGAGA AGGCGAGCGG
CTGCTCTGCG TGTTCAATCT CGGCAAGGAG GCGGCGAGCT TCGATTTGCC GGAGAGTGCG
GGCGCGGCGG TGTTCGAGGT TGGGGGCGTG ACACGGGATG CTGCGGCGCT GGCGCTTCAG
CCGAGGAGCG GGGCGATCTT CAAGGTTTGA
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| Protein sequence | MSAGRQGQEQ EEADVAGEKS EWWKGAVVYQ IYPRSFHDTN GDGIGDLKGI EEKLDHVAGL
GADAIWLSPI YPSPNRDFGY DVSDYCAIAP EMGSMADFDR LVEAVHGRGM KLILDQVLAH
TSEQHQWFQE SQLSADNPKS DWYVWADAKE DGTVPNNWLS AFGGPAWSWN PVRRKYYHHK
FLKSQPKLNF HNEQVVDACM DVLRFWLDRG VDGFRLDVAN AYLHDAALTD NPPLPMDKRT
FMDWAHAPRL QQHIHDANMP ENEWAMKRVR KVMDEYEERL AFGEFSERPE MFGRYAGGVE
RLHTGYTFDF LEDWSFEPPV FRAYYEKLLA PLSDLFPCVT FSNHDIVRPV TRWGGGQGDD
GLAKLALTLL VALRGTVLMF QGEELGLPEV DLERKYIKDP VGDLYFPWVK GRDGCRTPMP
WESGGAEAGF TIGTPWLPIP DYHRMRAVDV QQADEGSVLA HAKKVIALRK AHPALKTGAM
SCLDAEGKVL AFTREGEGER LLCVFNLGKE AASFDLPESA GAAVFEVGGV TRDAAALALQ
PRSGAIFKV
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