| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2953 |
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| Symbol | |
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| ID | 5456717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3151110 |
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| End bp | 3151844 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640878537 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001414217 |
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| Protein GI | 154253393 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.00842296 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGCGCA GCATTCTCAT CACCGACATA GCGCATTTCG TCGGCGGCCC GTCCGCCCGC
GCCCTCCTCG CCGAAGGCGC CCGCATCTAT GGCGTCGATG CAAGCTTCGC GGATGCCGCC
GCCCGCGCCG CCTTCGAGAC GAAGATACCC GGCGTGAAAG CACTCTCCGC GCAAGACCCG
CGGGAAGCCG TCGCCGCGGT GCTGGAAGCC GAGGGCCGCC TCGACGTCCT CATCAACAAT
GATGCCTGGC CCGCTATGCG CGGTCCCGTG GACGAAGCAA CCGACAAGGA CCTCCACGAA
ACCTTCGAGG CGCTGGTCTT CAAATCCTTC GCCATGACGC GCGCCGCCGT ACCGCAGATG
AAAAAGCAGC GCGCGGGAAA AATTCTCTTC CTCTCCTCCG CCGCACCGCT GAACGGCATC
CCCAACTACA GCATCTATGC CGCCGCGCGC GGCGCCGCCA ATTCGCTCGC GCTGACGCTG
GCAAAGGAAC TCGCCCCCTC CAACATCCAG GTGAACGCCC TCGCCTTCAA CTTCATCGAA
AGCCCGGACT ACTTCCCCGC ATCGCTCCTT GAAAATCCGA AATCGCGCGA CAAGATATTG
TCGAACATTC CGCTCGGCCG CCTCGGCAAG CCGGAAGAAG CCGCCGCCAT CGTCGCCTTC
CTCGCCGGCC CGACATCGGA TTTCATCACC GGCCAGTTGA TCCCGGTCGC CGGCGGTTGG
GCCACCGCGC GCTAG
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| Protein sequence | MARSILITDI AHFVGGPSAR ALLAEGARIY GVDASFADAA ARAAFETKIP GVKALSAQDP
REAVAAVLEA EGRLDVLINN DAWPAMRGPV DEATDKDLHE TFEALVFKSF AMTRAAVPQM
KKQRAGKILF LSSAAPLNGI PNYSIYAAAR GAANSLALTL AKELAPSNIQ VNALAFNFIE
SPDYFPASLL ENPKSRDKIL SNIPLGRLGK PEEAAAIVAF LAGPTSDFIT GQLIPVAGGW
ATAR
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