| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2911 |
|---|
| Symbol | |
|---|
| ID | 5455657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3112203 |
|---|
| End bp | 3112829 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640878493 |
|---|
| Product | riboflavin synthase, alpha subunit |
|---|
| Protein accession | YP_001414175 |
|---|
| Protein GI | 154253351 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0307] Riboflavin synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00128806 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.000806135 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACAG GAATCATCAC GGATGTTGGG CGCATTCGCG CTGTCGAGAA GCGCGGCGAT
GCACGCTTCG TAATCGGTAC TGCGTACGGC ACGGACGGAA TAGACATCGG TGCCTCGATT
GCCTGCGCCG GTTGCTGCCT GACGGTGGTG GAGAAAGGCC GGGACTCATC GGGCGACTGG
TTCGCCGTCG ACGTGTCCGC GGAGTCGCTG ACCTGCACTA CCCTTGGCGG CTGGGCAGAG
GGCACACGGG TCAATCTTGA AAGAGCGCTG AAAGCCGGCG ACGAACTTGG CGGGCACATC
GTCAGCGGCC ATGTCGATGG GATCTGCCAC ATTCGGGAAA TCCGTCCCGA AGGCGATTCC
ATGAGGTTCG TCTTCGAGGC TCCCGGCGAT CTCGGGCGGT TCATCGCTCC GAAGGGCTCG
GTGACATTGA ACGGTACCTC GCTGACAGTA AACGAGGTCG AAGACCGGAA AGCCGGCGGA
AACGCTGGCA GTACGCTATT CGGTGTCAAC ATCATTCCCC ACACCCAGGC GGTAACAACC
TGGGGTATGG CGAAAGCCGG CGATCCCGTT AATCTTGAAA TAGATATGCT GGCCCGGTAT
GTGGCGCGGC TGGTTCAAAA GGATTGA
|
|---|
| Protein sequence | MFTGIITDVG RIRAVEKRGD ARFVIGTAYG TDGIDIGASI ACAGCCLTVV EKGRDSSGDW
FAVDVSAESL TCTTLGGWAE GTRVNLERAL KAGDELGGHI VSGHVDGICH IREIRPEGDS
MRFVFEAPGD LGRFIAPKGS VTLNGTSLTV NEVEDRKAGG NAGSTLFGVN IIPHTQAVTT
WGMAKAGDPV NLEIDMLARY VARLVQKD
|
|---|
| |