| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2910 |
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| Symbol | |
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| ID | 5455697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3111080 |
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| End bp | 3112198 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640878492 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001414174 |
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| Protein GI | 154253350 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00004082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.00190231 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTCGGC CATACGACGC GCAGTTTATG AAAATGGCCC TTACGCTCGC CGAGCGCGGG
CTGGGAAGGG TCGCCCCTAA TCCGGCTGTA GGCTGCGTCG TCGTGCGCGA CGATGGCGAC
GGGCCGCGCG TCGTTGGGCG CGGCTGGACC CAGCCGGGAG GAAGGCCGCA CGCCGAGACG
GAAGCGCTGG CGCGCGCCGG GGCGCTTGCA AGGGGGGCGA CGGTCTATGT GAGCCTTGAG
CCGTGCTCAC ATCATGGCAA GACGGGGCCC TGCGCCGAGG CTCTCATTAA GGCGGGTGTT
GCACGCGTCG TAGGCGCAAT CGCGGATCCG AACCCGGCCG TTGCAGGGCG AGGGTTTGCC
GCGCTGGAAG CCAACGGTAT CGAGGTTACC GAGAATGTGT GCGCCGCCGA CGCGCACCAC
CTCAATGAAG GTTTTTTCCT TACCATGTCG GAAAAACGTC CGCTGGTAAC GCTGAAGATC
GCCAGTTCTC TCGACGGGTA TATCGCGACC CATGAGGGTC ACAGCCAATG GATTACCGGC
GACCGCGCGC GCGAGCGAGG CCATCTTCTG CGAGCAACGC ATGATGCGAT CATGGTGGGA
AGTGCGACCG CGATCGTGGA CGATCCGGAA CTCACATGCA GATTGCCGGG CCTCGGCGAT
CGCTCGCCGA TACGTATCAT CGCAGATGGA AGACTGCGCT TACCGCTGAC GTCGAAGCTG
GTGCGTGATG CCAGCAAGAC TCCTGTGTGG ATATTGACGC TGCCAGGCGG CGACGGACAG
AGACGTAAGG CTTTTGAGGA TTGTGGGGTC ACGCTAATCG AAGTCGAAGC GGGCGAGGGC
GGTATCATGA ATATGCGCGC CGCTCTTGAG CAGATTGCTG CGCGAGGCGT TACGCGGCTT
CTCGTGGAGG GCGGCTCTCG TCTTGCCGCG TCTCTCGTCC TGTCGCGCCT TGTCGACCGG
ATAGAATGGT TTCGGGCCCC CAAGCTGATC GGTGGCGATG GCTACCCTGC TGTTTCGGCG
CTCGGCGTCA AGAAGCTCGA CGGCGCGCCT GCTTTCGACC TGCGTGAGAC CGTTGCGTTG
GGCGAGGATT CGCTCTCGAG TTACGTCATT CGGAACTAG
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| Protein sequence | MARPYDAQFM KMALTLAERG LGRVAPNPAV GCVVVRDDGD GPRVVGRGWT QPGGRPHAET
EALARAGALA RGATVYVSLE PCSHHGKTGP CAEALIKAGV ARVVGAIADP NPAVAGRGFA
ALEANGIEVT ENVCAADAHH LNEGFFLTMS EKRPLVTLKI ASSLDGYIAT HEGHSQWITG
DRARERGHLL RATHDAIMVG SATAIVDDPE LTCRLPGLGD RSPIRIIADG RLRLPLTSKL
VRDASKTPVW ILTLPGGDGQ RRKAFEDCGV TLIEVEAGEG GIMNMRAALE QIAARGVTRL
LVEGGSRLAA SLVLSRLVDR IEWFRAPKLI GGDGYPAVSA LGVKKLDGAP AFDLRETVAL
GEDSLSSYVI RN
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