| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2881 |
|---|
| Symbol | |
|---|
| ID | 5454953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3085034 |
|---|
| End bp | 3085573 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640878463 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_001414145 |
|---|
| Protein GI | 154253321 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.901818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.000150044 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGC TTTGGCATCT CGCAACGCTG ATCGATTCCC TGAACGAAAC CATAGGCCGC
GCGGTCGCAT GGCTCGCGCT CCTGATGGTG CTGACGCAGT TCGTCGTCGT GCTGATGCGT
TATGTCTTTG GCGTCGGCTC CGTCTGGGCG CAGGAGTCGA TCGTCTACAT GCATGGCACC
ATGTTCATGC TCGCCGCCGG CTACACCCTC CTGCATAACG GCCATGTCCG GGTCGACGTC
ATTTATCGCG CCGCCTCTCC CGCCTTCAAG GCATGGGTGG ACCTTCTCGG CACCGTTTTC
CTTCTCCTGC CTGTCTGCTT TCTGATCTTC TATGTCGGCC TCCCCTATGT CGAAAGTTCG
TGGAGCAGCT TTGAAGGCAG CCGCGAGACG AGCGGCATTC AGGGCGTCTA TCTTCTGAAA
AGCGTGATCC TCGTTTTCGT CGTGCTTCTC GCGCTGCAAG GCCTCTCCAC CATCATTCAC
GCGTTGCGCG TTCTCGCCGG GCAGGAAAAG CCGGTCGAGG AAGCCGCGAC CATTCTCTAG
|
|---|
| Protein sequence | MNKLWHLATL IDSLNETIGR AVAWLALLMV LTQFVVVLMR YVFGVGSVWA QESIVYMHGT
MFMLAAGYTL LHNGHVRVDV IYRAASPAFK AWVDLLGTVF LLLPVCFLIF YVGLPYVESS
WSSFEGSRET SGIQGVYLLK SVILVFVVLL ALQGLSTIIH ALRVLAGQEK PVEEAATIL
|
|---|
| |