Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2878 |
Symbol | |
ID | 5453439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3082582 |
End bp | 3082869 |
Gene Length | 288 bp |
Protein Length | 95 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640878460 |
Product | excinuclease ABC subunit C |
Protein accession | YP_001414142 |
Protein GI | 154253318 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2827] Predicted endonuclease containing a URI domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.00418139 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.000396722 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCGTC CGGCCGTCTA CATTGTCGCA AACAAGCGGA ACGGAACCAT CTATACCGGC GTGACATCAC ATCTGGAGCG GCGCATCTAT GAGCATCGAG AAGGAGTGCT ATCCGGTTTC TCAAAACGCT ATGGCTGCAA GATGCTCGTC TGGTACGAAA TGCTAGACGA GATGGAATAT GCGATTGCAC GCGAGAAGCA GATCAAGGCC GGTACGAGGC AAAAGAAGAT CGATCTCATC CAAAGCGGGA ATCCCGAATG GCGGGATTTG TATGAGGAGT TGATCTGA
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Protein sequence | MKRPAVYIVA NKRNGTIYTG VTSHLERRIY EHREGVLSGF SKRYGCKMLV WYEMLDEMEY AIAREKQIKA GTRQKKIDLI QSGNPEWRDL YEELI
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