Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2868 |
Symbol | |
ID | 5454628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3072054 |
End bp | 3074213 |
Gene Length | 2160 bp |
Protein Length | 719 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640878450 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_001414132 |
Protein GI | 154253308 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.706713 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.0333863 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTACGTC AGTATGAGCT CGTAGATCGC GTGCTCGGCT ACGATCCGAA GGCGGACGAA GCCCTGATAA ACCGTGCCTA TGTCTATGCC ATGAAACAGC ATGGCAGCCA GAAGCGCGCC AGCGGCGATC CCTATTTCTC TCACCCGATC GAAGTGGCCG GCATTCTGAC CGACCTCAAG CTCGACACCG CGACGATCGT CACGGCGTTG CTGCACGACA CCATCGAAGA TACCGGGTCG ACGATGGAGG AGCTGACCAA GCTTTTCGGC GCGCAGGTGG CAGGGCTTGT CGACGGCGTG ACGAAGCTCA CGCGTCTCGA ACTCACCTCG GAACGGTCGA AGCAAGCGGA AAACTTTCGG AAGTTCCTGC TGGCCATGTC GAACGATATT CGCGTTCTGC TCGTGAAGCT CGCCGACCGC CTGCATAACA TGCGGACCCT CCACTTCATT TCTTCGGCCG ACAAGCGGCA GCGCATCGCG CTTGAGACGA TGGAAATCTA TGCCCCCCTC GCGGGCCGCA TGGGTATCCA GGAAGTGCGT GAGGAACTGG AAGACCTTGC GTTCAAGGAG CTGAACCCGG AAGCGCGCGA GACATTGCTG AAGCGGCTGA ATGAGTTCCG TGAGGCGAGC GGGGATACGG TCAAGCTTAT TGCCGACGAG ATCAAGGCAA AGCTCAACGA GGAGGGGCTT TCCTGCGAGG TAATCGGGCG CGAGAAGCGG CCCTACTCGA TGTGGCGCAA GATGGAGCGC CGCGCGATTT CGCTCGAACA ACTTTCGGAT ATTTTTGGTT TCCGGGTCGT GGTCGACGAG GTGCCGGATT GCTACCGCGC CGTCGGCATT CTTCACACCA ACTGGCCGAT GGTGCCCGGA AGATTCAAGG ACTACATCTC GACACCCAAG GCGAACGGTT ACCGCTCCGT GCATACGACG ATGATCGGGC CGCAGAAGAA GCGCGCCGAA GTGCAGATAC GCACGCGGAA AATGCATGAA GTGGCCGAAT ATGGCATTGC CGCGCACTGG CTCTACAAGG AGGCGCCAGC CGGCGGCGAG GACGACGAGA CATCCGGTGA TTTCGCAGGA ACATTCCGCT GGTTGCGGCA GCTTATCGAG ATGTTGGAGC ATGGCGGGAC GCCGGAAGAG TTTCTGGAAC ACACCAAGCT CCAGATGTTC TCGGACCAGG TCTTTTGTTT CACGCCCAAT GGACTTCTAA TTACGCTGCC GCGCGGCGCG ACGCCTATCG ACTTTGCGTA TGCGGTCCAT ACTGAAGTTG GCGACACCTG TGTCGGCTGC AAGATAAACG GGCGTCACAT GCCGCTTCGC ACGCATCTCG AGAATGGCGA CGAAGTCGAA ATCATTCGCT CGCAGGCACA ACGTCCGGCT CCTGCATGGG AAGCGTTCGT TGCGACCGGG AAGGCGCGTT CAGCCATCCG CCGATCCATC CGCGCGACGA AGCAGGCGGA ATTCAGCCGG CTCGGCAGGC AAATTCTGAA GAGCGCTTTC GAGCAAGCGG GCAAGGAAGC GACCGACACT CTGCTGGAGC GCGCGATCGG ACCGCTTCGG AAGAGCGATC TCAATGAACT TCTTGCTTCG GTCGGCGACG GAACATTAAG CGCGCCTCAG GTCTTGCAGG TTGTCTATCC GACCGAGCCG ACGCCGAAGG ATGGCCGGAA GCGCGGGGCG AAGATGAATG GCAAGGACGA GCGCGGTGGC TCCGTTCGTG TTACCGGCCG CGCGGCGGGG CTTGTGACCC GTTTTGCACC GGACATGTTT CCGCTGCCGG GCGAGCGGAT TGTCGGCATC ATGATGCCGG GCGAAGGCAT AACGATCTAT CCGATCGATA CTCCCGCGCT TGAAGAATTT GATGGCGAGC CGCTGCGCTG GATCGATGCA ACATGGGACA TCGACCCCGA TCATCCACAG ACATTCCCGG CGCGGTTGCG CGTTACAGCC CGAAACGAAG TCGGATCGCT GGCTAACATC TCCACGCTTA TCGCCGATTA TGGCAGCAAC ATCGCCAACC TTTCGCTGAC GCAACGCGAC ACGGATTTCT ACGATATCCA GATCGATCTG GAGGTCCGCG ACCTTAAACA TTTGACGCGC GTCATGTCGG CTTTGAACGG TTTGTCTTGC GTCAACAGTG TTGTCCGTCC GCGCCGCTGA
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Protein sequence | MLRQYELVDR VLGYDPKADE ALINRAYVYA MKQHGSQKRA SGDPYFSHPI EVAGILTDLK LDTATIVTAL LHDTIEDTGS TMEELTKLFG AQVAGLVDGV TKLTRLELTS ERSKQAENFR KFLLAMSNDI RVLLVKLADR LHNMRTLHFI SSADKRQRIA LETMEIYAPL AGRMGIQEVR EELEDLAFKE LNPEARETLL KRLNEFREAS GDTVKLIADE IKAKLNEEGL SCEVIGREKR PYSMWRKMER RAISLEQLSD IFGFRVVVDE VPDCYRAVGI LHTNWPMVPG RFKDYISTPK ANGYRSVHTT MIGPQKKRAE VQIRTRKMHE VAEYGIAAHW LYKEAPAGGE DDETSGDFAG TFRWLRQLIE MLEHGGTPEE FLEHTKLQMF SDQVFCFTPN GLLITLPRGA TPIDFAYAVH TEVGDTCVGC KINGRHMPLR THLENGDEVE IIRSQAQRPA PAWEAFVATG KARSAIRRSI RATKQAEFSR LGRQILKSAF EQAGKEATDT LLERAIGPLR KSDLNELLAS VGDGTLSAPQ VLQVVYPTEP TPKDGRKRGA KMNGKDERGG SVRVTGRAAG LVTRFAPDMF PLPGERIVGI MMPGEGITIY PIDTPALEEF DGEPLRWIDA TWDIDPDHPQ TFPARLRVTA RNEVGSLANI STLIADYGSN IANLSLTQRD TDFYDIQIDL EVRDLKHLTR VMSALNGLSC VNSVVRPRR
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