Gene Plav_2868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2868 
Symbol 
ID5454628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3072054 
End bp3074213 
Gene Length2160 bp 
Protein Length719 aa 
Translation table11 
GC content59% 
IMG OID640878450 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001414132 
Protein GI154253308 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.706713 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value0.0333863 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTACGTC AGTATGAGCT CGTAGATCGC GTGCTCGGCT ACGATCCGAA GGCGGACGAA 
GCCCTGATAA ACCGTGCCTA TGTCTATGCC ATGAAACAGC ATGGCAGCCA GAAGCGCGCC
AGCGGCGATC CCTATTTCTC TCACCCGATC GAAGTGGCCG GCATTCTGAC CGACCTCAAG
CTCGACACCG CGACGATCGT CACGGCGTTG CTGCACGACA CCATCGAAGA TACCGGGTCG
ACGATGGAGG AGCTGACCAA GCTTTTCGGC GCGCAGGTGG CAGGGCTTGT CGACGGCGTG
ACGAAGCTCA CGCGTCTCGA ACTCACCTCG GAACGGTCGA AGCAAGCGGA AAACTTTCGG
AAGTTCCTGC TGGCCATGTC GAACGATATT CGCGTTCTGC TCGTGAAGCT CGCCGACCGC
CTGCATAACA TGCGGACCCT CCACTTCATT TCTTCGGCCG ACAAGCGGCA GCGCATCGCG
CTTGAGACGA TGGAAATCTA TGCCCCCCTC GCGGGCCGCA TGGGTATCCA GGAAGTGCGT
GAGGAACTGG AAGACCTTGC GTTCAAGGAG CTGAACCCGG AAGCGCGCGA GACATTGCTG
AAGCGGCTGA ATGAGTTCCG TGAGGCGAGC GGGGATACGG TCAAGCTTAT TGCCGACGAG
ATCAAGGCAA AGCTCAACGA GGAGGGGCTT TCCTGCGAGG TAATCGGGCG CGAGAAGCGG
CCCTACTCGA TGTGGCGCAA GATGGAGCGC CGCGCGATTT CGCTCGAACA ACTTTCGGAT
ATTTTTGGTT TCCGGGTCGT GGTCGACGAG GTGCCGGATT GCTACCGCGC CGTCGGCATT
CTTCACACCA ACTGGCCGAT GGTGCCCGGA AGATTCAAGG ACTACATCTC GACACCCAAG
GCGAACGGTT ACCGCTCCGT GCATACGACG ATGATCGGGC CGCAGAAGAA GCGCGCCGAA
GTGCAGATAC GCACGCGGAA AATGCATGAA GTGGCCGAAT ATGGCATTGC CGCGCACTGG
CTCTACAAGG AGGCGCCAGC CGGCGGCGAG GACGACGAGA CATCCGGTGA TTTCGCAGGA
ACATTCCGCT GGTTGCGGCA GCTTATCGAG ATGTTGGAGC ATGGCGGGAC GCCGGAAGAG
TTTCTGGAAC ACACCAAGCT CCAGATGTTC TCGGACCAGG TCTTTTGTTT CACGCCCAAT
GGACTTCTAA TTACGCTGCC GCGCGGCGCG ACGCCTATCG ACTTTGCGTA TGCGGTCCAT
ACTGAAGTTG GCGACACCTG TGTCGGCTGC AAGATAAACG GGCGTCACAT GCCGCTTCGC
ACGCATCTCG AGAATGGCGA CGAAGTCGAA ATCATTCGCT CGCAGGCACA ACGTCCGGCT
CCTGCATGGG AAGCGTTCGT TGCGACCGGG AAGGCGCGTT CAGCCATCCG CCGATCCATC
CGCGCGACGA AGCAGGCGGA ATTCAGCCGG CTCGGCAGGC AAATTCTGAA GAGCGCTTTC
GAGCAAGCGG GCAAGGAAGC GACCGACACT CTGCTGGAGC GCGCGATCGG ACCGCTTCGG
AAGAGCGATC TCAATGAACT TCTTGCTTCG GTCGGCGACG GAACATTAAG CGCGCCTCAG
GTCTTGCAGG TTGTCTATCC GACCGAGCCG ACGCCGAAGG ATGGCCGGAA GCGCGGGGCG
AAGATGAATG GCAAGGACGA GCGCGGTGGC TCCGTTCGTG TTACCGGCCG CGCGGCGGGG
CTTGTGACCC GTTTTGCACC GGACATGTTT CCGCTGCCGG GCGAGCGGAT TGTCGGCATC
ATGATGCCGG GCGAAGGCAT AACGATCTAT CCGATCGATA CTCCCGCGCT TGAAGAATTT
GATGGCGAGC CGCTGCGCTG GATCGATGCA ACATGGGACA TCGACCCCGA TCATCCACAG
ACATTCCCGG CGCGGTTGCG CGTTACAGCC CGAAACGAAG TCGGATCGCT GGCTAACATC
TCCACGCTTA TCGCCGATTA TGGCAGCAAC ATCGCCAACC TTTCGCTGAC GCAACGCGAC
ACGGATTTCT ACGATATCCA GATCGATCTG GAGGTCCGCG ACCTTAAACA TTTGACGCGC
GTCATGTCGG CTTTGAACGG TTTGTCTTGC GTCAACAGTG TTGTCCGTCC GCGCCGCTGA
 
Protein sequence
MLRQYELVDR VLGYDPKADE ALINRAYVYA MKQHGSQKRA SGDPYFSHPI EVAGILTDLK 
LDTATIVTAL LHDTIEDTGS TMEELTKLFG AQVAGLVDGV TKLTRLELTS ERSKQAENFR
KFLLAMSNDI RVLLVKLADR LHNMRTLHFI SSADKRQRIA LETMEIYAPL AGRMGIQEVR
EELEDLAFKE LNPEARETLL KRLNEFREAS GDTVKLIADE IKAKLNEEGL SCEVIGREKR
PYSMWRKMER RAISLEQLSD IFGFRVVVDE VPDCYRAVGI LHTNWPMVPG RFKDYISTPK
ANGYRSVHTT MIGPQKKRAE VQIRTRKMHE VAEYGIAAHW LYKEAPAGGE DDETSGDFAG
TFRWLRQLIE MLEHGGTPEE FLEHTKLQMF SDQVFCFTPN GLLITLPRGA TPIDFAYAVH
TEVGDTCVGC KINGRHMPLR THLENGDEVE IIRSQAQRPA PAWEAFVATG KARSAIRRSI
RATKQAEFSR LGRQILKSAF EQAGKEATDT LLERAIGPLR KSDLNELLAS VGDGTLSAPQ
VLQVVYPTEP TPKDGRKRGA KMNGKDERGG SVRVTGRAAG LVTRFAPDMF PLPGERIVGI
MMPGEGITIY PIDTPALEEF DGEPLRWIDA TWDIDPDHPQ TFPARLRVTA RNEVGSLANI
STLIADYGSN IANLSLTQRD TDFYDIQIDL EVRDLKHLTR VMSALNGLSC VNSVVRPRR